Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015196.1 Corchorus capsularis cultivar CVL-1 contig15217, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16634

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45--74
11
2.7
11
89
0
51
26
0
3
70
1.03
548--578
12
2.6
12
100
0
62
0
16
32
51
1.44
788--815
14
2.0
14
100
0
56
50
0
0
50
1.00
951--993
20
2.1
21
86
4
61
20
18
20
39
1.93
981--1063
42
2.0
43
85
7
116
34
22
18
24
1.96
1878--1955
24
3.2
24
79
0
84
11
26
34
26
1.91
1938--1994
24
2.4
22
81
16
69
19
28
15
36
1.92
2218--2365
28
5.3
28
86
3
174
16
27
28
28
1.97
2746--2778
16
2.1
16
100
0
66
12
27
18
42
1.85
5212--5468
55
4.7
54
79
7
286
22
25
19
32
1.97
5217--5483
109
2.4
110
87
3
360
22
26
18
32
1.97
6316--6564
61
4.0
61
86
9
344
17
20
17
44
1.86
6318--6564
58
4.1
59
85
10
318
17
20
17
44
1.87
6438--6561
66
1.9
66
93
3
214
19
20
16
43
1.88
11043--11141
28
3.5
28
87
2
137
16
27
32
24
1.96
11106--11439
29
11.2
29
82
6
357
20
23
29
26
1.99
11258--11333
38
2.0
38
94
0
134
22
22
27
27
1.99
11200--11439
96
2.6
96
83
7
311
20
22
28
28
1.99
11173--11417
125
2.0
125
93
0
418
21
22
28
28
1.99
11152--11439
154
1.9
154
88
1
443
21
21
28
28
1.99
12099--12236
28
4.8
28
80
7
161
18
12
26
43
1.85
12255--12459
59
3.5
59
82
2
198
16
20
31
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16352--16390
15
2.6
16
84
12
55
38
5
7
48
1.54

Tables:   1

The End!