Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000152.1 Corchorus capsularis cultivar CVL-1 contig00152, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Found at i:983 original size:21 final size:21

Alignment explanation


    Indices: 941--983  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        931 CCTGGACCCA

                  *          *   
        941 TTCCACTTGCAACTCCATTCT
          1 TTCCACATGCAACTCCAATCT

                                  
        962 TTCCACATGCAACAT-CAATCT
          1 TTCCACATGCAAC-TCCAATCT

             
        983 T
          1 T

        984 GTAGAAAGCA


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21   18  0.95
  22    1  0.05

ACGTcount: A:0.26, C:0.35, G:0.05, T:0.35


Consensus pattern (21 bp):   
TTCCACATGCAACTCCAATCT
Done.