Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015200.1 Corchorus capsularis cultivar CVL-1 contig15221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15859
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31


Found at i:1259 original size:6 final size:6

Alignment explanation


    Indices: 1223--1258  Score: 54
    Period size: 6  Copynumber: 6.0  Consensus size: 6

       1213 AATATAATAT

                                    *          *     
       1223 ATATTA ATATTA ATATTA ATAATA ATATTA TTATTA
          1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA

       1259 TACATAGGTA


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (6 bp):   
ATATTA
Done.