Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015201.1 Corchorus capsularis cultivar CVL-1 contig15222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95520

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4055--4135
33
2.5
33
86
9
107
9
25
40
23
1.85
4086--4138
10
5.0
10
73
13
52
5
22
45
26
1.74
5747--5816
30
2.3
31
80
7
81
20
18
22
38
1.93
5840--5906
30
2.2
30
91
0
107
28
19
28
23
1.98
6319--6382
32
2.0
32
96
0
119
51
12
7
28
1.67
6999--7033
15
2.2
16
95
5
63
85
0
14
0
0.59
7208--7282
30
2.5
29
77
14
82
28
2
0
69
1.02
8439--8469
1
31.0
1
100
0
62
100
0
0
0
0.00
13099--13150
22
2.2
24
83
10
63
48
9
0
42
1.36
23542--23569
3
9.3
3
100
0
56
0
32
0
67
0.91
25687--25758
36
2.0
36
94
0
126
25
13
19
41
1.88
33260--33295
17
2.0
19
89
10
58
55
0
0
44
0.99
41583--41607
7
3.6
7
100
0
50
64
12
0
24
1.27
47958--47983
13
2.0
13
100
0
52
30
15
30
23
1.95
49805--49877
33
2.2
33
83
9
87
8
28
41
21
1.82
49848--49900
23
2.3
23
86
0
70
11
33
35
18
1.87
73904--73929
6
4.3
6
100
0
52
50
34
0
15
1.45
78561--78587
2
13.5
2
100
0
54
51
0
48
0
1.00
92066--92095
2
15.0
2
100
0
60
50
0
50
0
1.00
94030--94056
11
2.5
11
100
0
54
44
18
25
11
1.83
94436--94485
23
2.2
23
85
3
66
30
0
6
64
1.18

Tables:   1

The End!