Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015208.1 Corchorus capsularis cultivar CVL-1 contig15229, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45230

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4557--4636
14
5.9
14
72
18
71
32
0
10
57
1.32
4559--4635
26
3.0
26
77
9
86
32
0
10
57
1.33
4553--4685
18
7.9
18
66
23
67
30
1
8
59
1.36
4896--4961
30
2.4
28
83
14
77
31
13
46
7
1.71
9156--9226
15
5.3
14
75
25
73
54
11
0
33
1.36
9169--9215
11
3.9
11
80
20
58
55
10
0
34
1.35
9156--9226
26
2.7
26
97
0
133
54
11
0
33
1.36
9266--9320
25
2.1
26
90
6
85
69
3
1
25
1.15
9742--9799
27
2.1
27
84
9
73
34
3
3
58
1.32
9759--9800
21
1.9
23
85
9
61
38
2
4
54
1.34
21875--21912
18
2.1
19
90
5
60
18
39
13
28
1.88
22754--22863
33
3.3
33
83
6
143
9
26
41
22
1.83
22985--23022
19
2.0
19
89
0
58
28
28
18
23
1.98
27200--27261
30
2.1
29
90
3
97
22
6
9
61
1.50
29396--29496
33
3.1
33
88
2
141
14
40
32
11
1.83
29564--29627
33
1.9
33
90
0
101
12
35
39
12
1.81
42456--42506
9
5.9
9
86
4
52
47
11
5
35
1.65
42450--42495
8
5.5
8
87
5
56
50
10
2
36
1.50
42450--42517
34
2.0
33
94
2
118
48
11
4
35
1.60
44867--44940
29
2.6
29
89
2
105
14
12
31
41
1.83

Tables:   1

The End!