Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015209.1 Corchorus capsularis cultivar CVL-1 contig15230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6672

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
429--490
31
2.0
31
93
0
106
32
12
17
37
1.88
2112--2197
32
2.7
31
81
13
86
48
5
19
25
1.71
2325--2377
16
3.3
16
76
10
63
52
3
22
20
1.62
2350--2461
40
2.8
40
94
0
188
52
5
21
20
1.66
2453--2560
22
5.0
22
76
7
105
53
6
18
21
1.66
2489--2714
7
31.7
7
65
10
55
54
4
20
19
1.62
2511--2730
35
6.0
36
77
12
207
54
5
20
19
1.65
2636--2728
14
6.6
14
72
11
64
55
4
19
20
1.59
3027--3418
7
55.7
7
64
15
103
54
2
23
19
1.56
3181--3297
35
3.4
35
85
3
121
54
1
23
20
1.53
3189--3382
85
2.3
85
85
3
250
56
2
22
19
1.53
3245--3347
50
2.1
50
81
7
120
57
1
21
19
1.51
3271--3397
35
3.6
34
87
5
164
55
3
22
18
1.57
3225--3432
85
2.4
86
80
5
224
56
3
21
18
1.56
3386--3442
15
3.9
15
75
13
64
57
5
15
21
1.57
3377--3440
29
2.2
28
83
10
76
54
6
18
20
1.65
3391--3546
21
7.3
21
75
9
113
55
5
17
21
1.62
3374--3544
35
4.9
34
70
22
104
53
5
18
21
1.65
3456--3558
21
5.0
21
83
4
129
50
5
21
22
1.70
5965--5990
3
8.7
3
100
0
52
0
30
0
69
0.89
5914--6028
60
1.9
60
85
3
160
26
17
8
46
1.77
6014--6088
24
3.2
24
83
9
86
50
4
18
26
1.64

Tables:   1

The End!