Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015215.1 Corchorus capsularis cultivar CVL-1 contig15236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7879
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:5460 original size:43 final size:43

Alignment explanation


    Indices: 5399--5485  Score: 174
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       5389 CCCAATCGCG

                                                       
       5399 TTCTTGTGGCTTTAAAATAAAAATAAAATATTTTTATTACTTA
          1 TTCTTGTGGCTTTAAAATAAAAATAAAATATTTTTATTACTTA

                                                       
       5442 TTCTTGTGGCTTTAAAATAAAAATAAAATATTTTTATTACTTA
          1 TTCTTGTGGCTTTAAAATAAAAATAAAATATTTTTATTACTTA

             
       5485 T
          1 T

       5486 GAAGTAATAA


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  43   44  1.00

ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47


Consensus pattern (43 bp):   
TTCTTGTGGCTTTAAAATAAAAATAAAATATTTTTATTACTTA
Done.