Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015221.1 Corchorus capsularis cultivar CVL-1 contig15242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36327

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
639--791
69
2.3
66
81
6
180
38
11
15
35
1.82
620--944
44
7.4
43
71
11
207
38
10
16
34
1.83
541--947
22
18.6
22
68
14
108
37
10
16
35
1.83
1292--1376
23
3.9
21
83
11
100
35
5
20
38
1.77
1272--1377
22
4.7
21
80
13
88
34
8
18
37
1.82
1476--1555
22
3.8
22
73
17
80
38
10
11
40
1.75
1476--1555
41
2.0
40
82
9
99
38
10
11
40
1.75
2341--2418
33
2.4
33
76
2
86
26
21
24
26
1.99
3510--3790
145
1.9
146
92
0
474
37
12
12
38
1.80
4961--5003
21
2.0
21
86
8
61
62
2
11
23
1.40
4961--5000
20
2.0
20
86
13
57
62
2
12
22
1.42
8476--8791
166
1.9
166
92
0
533
43
10
8
37
1.69
8918--8951
12
2.6
13
90
9
52
55
5
2
35
1.39
8692--9084
197
2.0
195
91
3
639
47
9
10
32
1.70
9557--9878
177
1.8
178
81
5
411
38
17
11
32
1.85
11399--11492
45
2.2
43
86
7
129
39
21
5
34
1.76
13065--13090
2
13.0
2
100
0
52
50
0
0
50
1.00
17698--17961
132
2.0
131
87
3
379
46
2
10
39
1.52
24871--25091
108
2.0
108
98
0
424
31
30
9
28
1.88
26996--27031
12
2.9
12
87
4
54
72
0
25
2
0.98
29940--29970
12
2.6
12
94
0
53
22
45
3
29
1.68
30084--30280
87
2.3
86
79
8
220
36
24
8
31
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34893--35524
21
30.8
21
81
5
709
36
21
12
29
1.90
36039--36094
3
18.7
3
76
7
51
55
3
1
39
1.28

Tables:   1

The End!