Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015224.1 Corchorus capsularis cultivar CVL-1 contig15245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51980

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1369--1403
17
2.1
17
88
0
52
45
20
14
20
1.85
1716--1762
23
2.0
23
100
0
94
36
17
12
34
1.87
2233--2403
27
6.3
27
91
0
270
21
16
42
19
1.90
4591--4648
6
9.8
6
73
3
55
67
1
24
6
1.25
4987--5412
203
2.1
203
88
4
624
25
24
27
22
2.00
28401--28625
105
2.2
104
85
4
301
34
17
18
29
1.94
31853--31967
61
1.9
61
90
0
185
33
29
10
26
1.90
40461--40499
19
2.1
18
90
4
60
56
2
5
35
1.35
41702--41768
30
2.3
29
84
2
80
29
14
29
25
1.95
50776--50849
26
2.8
27
77
4
87
17
16
22
43
1.88
51035--51079
21
2.1
21
91
0
72
17
40
8
33
1.81
51306--51332
12
2.2
12
100
0
54
29
0
0
70
0.88
51383--51454
11
5.4
15
66
25
54
31
1
12
54
1.47
51387--51454
26
2.6
26
95
0
118
33
1
11
52
1.47
51464--51522
25
2.4
25
91
5
95
40
0
23
35
1.55
51593--51632
21
2.0
21
90
5
64
30
5
42
22
1.75
51829--51886
29
2.0
29
82
0
71
44
13
17
24
1.85

Tables:   1

The End!