Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015229.1 Corchorus capsularis cultivar CVL-1 contig15250, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46238

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1115--1140
11
2.4
11
100
0
52
15
11
19
53
1.71
1817--1851
18
1.9
18
88
0
52
82
0
17
0
0.66
5179--5208
14
2.1
15
93
6
53
33
0
3
63
1.11
7218--7255
1
38.0
1
100
0
76
0
0
0
100
0.00
10780--10835
27
2.1
27
89
0
85
21
19
37
21
1.94
22836--22886
24
2.0
26
88
7
79
41
5
23
29
1.78
24576--25017
164
2.7
165
83
4
557
40
16
14
28
1.88
25145--25179
2
17.5
2
100
0
70
48
0
0
51
1.00
25220--25250
16
1.9
16
93
0
53
87
0
12
0
0.55
26531--26563
2
17.0
2
93
6
59
48
0
0
51
1.00
27796--27924
33
4.2
31
70
10
95
20
17
20
41
1.90
30269--30506
119
2.0
119
98
0
458
18
23
16
41
1.89
37321--37349
14
2.1
14
93
6
51
58
0
0
41
0.98
41371--41459
22
4.0
22
67
10
65
34
8
21
34
1.85
41492--41793
22
13.5
22
72
10
191
37
9
17
35
1.82
41688--41813
66
1.9
67
80
1
146
33
8
17
40
1.80
45640--45767
62
2.1
62
98
0
247
33
22
16
27
1.95
45816--45846
15
2.1
15
93
0
53
19
29
6
45
1.75

Tables:   1

The End!