Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015236.1 Corchorus capsularis cultivar CVL-1 contig15257, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33405

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1920--1983
24
2.7
24
81
11
69
12
20
32
34
1.90
2243--2324
42
2.0
42
92
0
137
36
8
15
39
1.78
2831--2871
16
2.6
16
84
0
55
17
24
34
24
1.96
2864--2902
16
2.4
16
86
0
60
12
23
35
28
1.91
14003--14044
20
2.2
20
91
4
68
52
2
0
45
1.13
15449--15483
18
2.1
17
89
10
54
22
0
0
77
0.78
16294--16332
20
2.0
20
89
0
60
56
0
2
41
1.13
19184--19225
2
21.0
2
100
0
84
50
50
0
0
1.00
21859--21889
2
15.5
2
100
0
62
48
0
0
51
1.00
27555--27581
2
13.5
2
100
0
54
48
0
0
51
1.00
31231--31323
13
7.5
12
76
17
68
38
2
12
46
1.54
31231--31323
25
3.8
24
77
14
75
38
2
12
46
1.54

Tables:   1

The End!