Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015237.1 Corchorus capsularis cultivar CVL-1 contig15258, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130663

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4681--4811
43
3.0
44
84
7
180
35
13
6
43
1.71
6143--6186
21
2.1
21
83
8
54
2
20
2
75
1.03
6874--6913
20
2.0
20
95
0
71
37
5
15
42
1.68
10957--11051
16
6.7
15
77
14
78
16
20
13
49
1.79
10968--11013
16
2.9
16
96
0
83
17
19
13
50
1.78
10984--11060
39
1.9
40
89
5
120
16
19
12
50
1.77
12145--12175
9
3.4
9
100
0
62
45
9
22
22
1.81
14737--14784
10
4.9
10
82
2
53
43
41
14
0
1.45
15233--15267
2
18.5
2
88
11
56
48
0
0
51
1.00
17535--17571
2
19.0
2
91
5
58
45
0
2
51
1.15
40879--40937
30
2.0
30
86
6
84
25
28
13
32
1.94
41282--41395
33
3.6
30
80
10
120
40
16
10
32
1.83
41416--41539
33
3.8
33
81
4
160
41
18
11
29
1.85
41406--41546
66
2.1
66
94
0
219
42
19
9
27
1.83
49586--49653
33
2.0
33
85
2
91
52
7
8
30
1.60
49784--49827
20
2.1
22
87
8
65
63
4
6
25
1.38
50899--52849
973
2.0
975
94
1
3444
30
18
16
33
1.94
53371--53397
3
9.0
3
100
0
54
0
33
0
66
0.92
56978--57024
22
2.2
22
84
3
60
23
19
14
42
1.88
56987--57032
22
2.1
22
100
0
92
21
19
10
47
1.80
57555--57628
27
2.7
28
74
17
75
43
27
13
16
1.85
77331--77356
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78564--78614
26
2.0
26
92
0
84
19
37
1
41
1.63
78809--78859
22
2.3
22
89
0
75
39
3
17
39
1.68
79591--79621
13
2.3
14
94
5
55
45
0
6
48
1.28
79903--79940
2
19.0
2
100
0
76
50
0
0
50
1.00
81682--81720
20
2.0
20
85
10
53
28
5
2
64
1.28
81889--82025
22
6.1
21
76
9
94
33
8
18
40
1.80
82082--82209
22
5.9
21
72
11
96
43
11
13
31
1.80
82061--82227
44
3.8
43
70
12
117
41
10
12
35
1.77
82246--82894
22
29.9
22
70
13
253
39
9
14
36
1.80
84303--84620
127
2.6
120
79
12
344
38
18
19
23
1.93
88416--88472
30
1.9
30
85
0
78
40
17
10
31
1.84
88497--89319
30
26.7
30
83
7
819
33
17
15
32
1.92
88345--88574
107
2.2
103
91
3
381
36
15
13
33
1.87
88497--89319
91
8.9
90
84
6
855
33
17
15
32
1.92
88497--89319
121
6.7
120
83
7
855
33
17
15
32
1.92
88615--89042
228
1.9
226
91
1
705
35
17
15
31
1.91
92747--92789
16
2.8
15
83
13
52
76
0
23
0
0.78
92913--92973
29
2.1
29
87
3
86
40
9
26
22
1.85
93926--93955
2
15.0
2
100
0
60
50
0
0
50
1.00
94308--94341
3
11.7
3
93
6
61
32
0
0
67
0.91
94309--94337
14
2.1
14
100
0
58
34
0
0
65
0.93
94308--94340
17
1.9
17
100
0
66
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94564--94600
2
18.5
2
100
0
74
51
0
0
48
1.00
97249--97379
37
3.5
37
81
2
147
32
22
15
29
1.95
100368--100406
2
19.5
2
100
0
78
0
0
48
51
1.00
101409--101433
7
3.6
7
100
0
50
64
12
0
24
1.27
120101--120145
21
2.1
21
87
0
63
13
28
28
28
1.94
120854--120999
50
2.9
50
89
3
215
31
33
11
23
1.90
127743--127782
12
3.2
12
93
6
71
35
15
22
27
1.94
129065--129100
10
3.6
10
92
0
63
33
8
19
38
1.82
130114--130143
16
1.9
15
93
6
51
63
0
0
36
0.95

Tables:   1

The End!