Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015242.1 Corchorus capsularis cultivar CVL-1 contig15263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 140173
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31
Found at i:5621 original size:48 final size:47
Alignment explanation
Indices: 5520--5666 Score: 231
Period size: 47 Copynumber: 3.1 Consensus size: 47
5510 ACTTCGTAGA
* *
5520 GAAGTGAGAAAAGACCAACTTTGGTCGAAGGATTTCTGACTCACATG
1 GAAGTGAGGAAAGACCAACTTGGGTCGAAGGATTTCTGACTCACATG
**
5567 GAAGTGAGGAAAGACCAACTTGGGTCGGAACAATTTCTGACTCACATG
1 GAAGTGAGGAAAGACCAACTTGGGTC-GAAGGATTTCTGACTCACATG
* *
5615 GAAGTGAGGAAAGACCAACTTGGGTCGAAGGATTGCTAACTCACATG
1 GAAGTGAGGAAAGACCAACTTGGGTCGAAGGATTTCTGACTCACATG
5662 GAAGT
1 GAAGT
5667 TGTAAATTGA
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 46 0.51
48 45 0.49
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (47 bp):
GAAGTGAGGAAAGACCAACTTGGGTCGAAGGATTTCTGACTCACATG
Found at i:5699 original size:23 final size:23
Alignment explanation
Indices: 5673--5755 Score: 80
Period size: 23 Copynumber: 3.5 Consensus size: 23
5663 AAGTTGTAAA
*
5673 TTGAAAAGTTGTGAATTGAAATG
1 TTGAAAAGTTGTAAATTGAAATG
*
5696 TTGAAAAGTTGTAAATTGAAAAAG
1 TTGAAAAGTTGTAAATTG-AAATG
* *
5720 TTGTAAAAGCTGAAAAGTTGTAAA--
1 TTG-AAAAGTTGTAAA-TTG-AAATG
5744 TTGAAAAGTTGT
1 TTGAAAAGTTGT
5756 TGGAGTGCCC
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
23 24 0.48
24 10 0.20
25 10 0.20
26 6 0.12
ACGTcount: A:0.43, C:0.01, G:0.23, T:0.33
Consensus pattern (23 bp):
TTGAAAAGTTGTAAATTGAAATG
Found at i:5720 original size:16 final size:15
Alignment explanation
Indices: 5663--5755 Score: 92
Period size: 15 Copynumber: 6.5 Consensus size: 15
5653 ACTCACATGG
5663 AAGTTGTAAATTGAA
1 AAGTTGTAAATTGAA
*
5678 AAGTTGTGAATTG-A
1 AAGTTGTAAATTGAA
5692 AA--TG----TTGAA
1 AAGTTGTAAATTGAA
5701 AAGTTGTAAATTGAAA
1 AAGTTGTAAATTG-AA
*
5717 AAGTTGTAAAAGCTGAA
1 AAGTTGT-AAA-TTGAA
5734 AAGTTGTAAATTGAA
1 AAGTTGTAAATTGAA
5749 AAGTTGT
1 AAGTTGT
5756 TGGAGTGCCC
Statistics
Matches: 65, Mismatches: 3, Indels: 20
0.74 0.03 0.23
Matches are distributed among these distances:
8 3 0.05
9 3 0.05
11 2 0.03
12 2 0.03
14 3 0.05
15 26 0.40
16 12 0.18
17 12 0.18
18 2 0.03
ACGTcount: A:0.44, C:0.01, G:0.23, T:0.32
Consensus pattern (15 bp):
AAGTTGTAAATTGAA
Found at i:5835 original size:38 final size:38
Alignment explanation
Indices: 5784--5916 Score: 194
Period size: 38 Copynumber: 3.5 Consensus size: 38
5774 AGCAACCGAA
5784 AACTGCTGAAAGATGACCTGTTTCCAGTCGATCTTGAT
1 AACTGCTGAAAGATGACCTGTTTCCAGTCGATCTTGAT
* * *
5822 AACTGTTGAAAGATGACCTGTTTCCAGTCGAACTTGAC
1 AACTGCTGAAAGATGACCTGTTTCCAGTCGATCTTGAT
* *
5860 AAGTGCTGAAAGATGACCTGTTTCCAGTCAATCTTGAT
1 AACTGCTGAAAGATGACCTGTTTCCAGTCGATCTTGAT
* * *
5898 AATTGTTGAAAGATAACCT
1 AACTGCTGAAAGATGACCT
5917 CTGATAATTT
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 84 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (38 bp):
AACTGCTGAAAGATGACCTGTTTCCAGTCGATCTTGAT
Found at i:5968 original size:38 final size:37
Alignment explanation
Indices: 5918--6009 Score: 159
Period size: 38 Copynumber: 2.5 Consensus size: 37
5908 AGATAACCTC
5918 TGATAAT-TTGAAAGATGACATGTTTCCAGTCGATCT
1 TGATAATGTTGAAAGATGACATGTTTCCAGTCGATCT
5954 TGATAAGTGTTGAAAGATGACATGTTTCCAGTCGATCT
1 TGATAA-TGTTGAAAGATGACATGTTTCCAGTCGATCT
5992 TGATAATTGTTGAAAGAT
1 TGATAA-TGTTGAAAGAT
6010 AACCTCTGAT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
36 6 0.11
37 1 0.02
38 46 0.87
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.36
Consensus pattern (37 bp):
TGATAATGTTGAAAGATGACATGTTTCCAGTCGATCT
Found at i:5980 original size:136 final size:136
Alignment explanation
Indices: 5790--6418 Score: 814
Period size: 136 Copynumber: 4.7 Consensus size: 136
5780 CGAAAACTGC
* *
5790 TGAAAGATGACCTGTTTCCAGTCGATCTTGATAACTGTTGAAAGATGACCTGTTTCCAGTCGAAC
1 TGAAAGATGACATGTTTCCAGTCGATCTTGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATC
* * *
5855 TTGACAAGTGCTGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGAAAGATAACCTCTG
66 TTGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGAAAGATAACCTCTG
5920 ATAATT
131 ATAATT
* *
5926 TGAAAGATGACATGTTTCCAGTCGATCTTGATAAGTGTTGAAAGATGACATGTTTCCAGTCGATC
1 TGAAAGATGACATGTTTCCAGTCGATCTTGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATC
* * * * * **
5991 TTGATAATTGTTGAAAGATAACC--TCT-GA-T-AAT-TTGA-AA--GATGACATG-TTTCCAGT
66 TTGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGA-AAGATAACC--T
*
6046 C-GAT--CT
128 CTGATAATT
* *** * * * *
6052 TGATA-AT----TGTTGAAAGAT-AACCTCTGATAA-T-TTGAAAGAGGACCTGTTTCTAGTCGA
1 TGAAAGATGACATGTTTCCAG-TCGATCT-TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGA
6109 TCTTGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGAAAGATAACCTC
64 TCTTGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGAAAGATAACCTC
6174 TGATAATT
129 TGATAATT
*
6182 TGAAAGATGACATGTTTCTAGTCGATCTTGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATC
1 TGAAAGATGACATGTTTCCAGTCGATCTTGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATC
* *
6247 TTGATCATTCTTGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGAAAGATAACCTCTG
66 TTGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGAAAGATAACCTCTG
6312 ATAATT
131 ATAATT
* *
6318 TGAAAGATGACCTGTTTCCAGTCTATCTTGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATC
1 TGAAAGATGACATGTTTCCAGTCGATCTTGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATC
6383 TTGATAATTGTTGAAAGATGACCTGTTTCCAGTCAA
66 TTGATAATTGTTGAAAGATGACCTGTTTCCAGTCAA
6419 CTTTTGATGA
Statistics
Matches: 420, Mismatches: 47, Indels: 52
0.81 0.09 0.10
Matches are distributed among these distances:
120 47 0.11
121 10 0.02
122 9 0.02
123 1 0.00
124 1 0.00
125 5 0.01
126 9 0.02
127 11 0.03
128 10 0.02
129 11 0.03
130 9 0.02
131 5 0.01
132 1 0.00
133 1 0.00
134 9 0.02
135 10 0.02
136 271 0.65
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (136 bp):
TGAAAGATGACATGTTTCCAGTCGATCTTGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATC
TTGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGAAAGATAACCTCTG
ATAATT
Found at i:5996 original size:98 final size:100
Alignment explanation
Indices: 5818--6406 Score: 582
Period size: 98 Copynumber: 6.0 Consensus size: 100
5808 CAGTCGATCT
* * * *
5818 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGAACTTGACAAGTGCTGAAAGATGACCTGTTT
1 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCTTGATAATTGTTGAAAGATGACCTGTTT
*
5883 CCAGTCAATCTTGATAATTGTTGAAAGATAACCTC
66 CCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
* * *
5918 TGATAA-T-TTGAAAGATGACATGTTTCCAGTCGATCTTGATAAGTGTTGAAAGATGACATGTTT
1 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCTTGATAATTGTTGAAAGATGACCTGTTT
5981 CCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
66 CCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
* * * *
6016 TGATAA-T-TTGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTCTGA
1 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCTTGATAATTGTTGAAAGATGACCTGT-T
* * * ** * ** *** * *
6079 T-AATTTGA--AAGAGGACCTGTTTCTAG-TCGATCT-
65 TCCAGTCGATCTTGA-TAATTGTTGAAAGAT-AACCTC
* * * * *
6112 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGAAAGATAACCTCTGA
1 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCTTGATAATTGTTGAAAGATGACCTGT-T
* * * ** *** * *
6177 T-AATTTGA--AAGATGACA-TGTTTCTAG-TCGATCT-
65 TCCAGTCGATCTTGAT-A-ATTGTTGAAAGAT-AACCTC
* *
6210 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCTTGATCATTCTTGAAAGATGACCTGTTT
1 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCTTGATAATTGTTGAAAGATGACCTGTTT
*
6275 CCAGTCAATCTTGATAATTGTTGAAAGATAACCTC
66 CCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
* *
6310 TGATAA-T-TTGAAAGATGACCTGTTTCCAGTCTATCTTGATAACTGTTGAAAGATGACCTGTTT
1 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCTTGATAATTGTTGAAAGATGACCTGTTT
*
6373 CCAGTCGATCTTGATAATTGTTGAAAGATGACCT
66 CCAGTCGATCTTGATAATTGTTGAAAGATAACCT
6407 GTTTCCAGTC
Statistics
Matches: 424, Mismatches: 52, Indels: 28
0.84 0.10 0.06
Matches are distributed among these distances:
96 9 0.02
97 12 0.03
98 374 0.88
99 13 0.03
100 16 0.04
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (100 bp):
TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCTTGATAATTGTTGAAAGATGACCTGTTT
CCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
Found at i:6027 original size:60 final size:60
Alignment explanation
Indices: 5954--6134 Score: 308
Period size: 60 Copynumber: 3.0 Consensus size: 60
5944 CAGTCGATCT
5954 TGATAAGTGTTGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
1 TGATAA-T-TTGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
6016 TGATAATTTGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
1 TGATAATTTGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
* * * *
6076 TGATAATTTGAAAGAGGACCTGTTTCTAGTCGATCTTGATAATTGTTGAAAGATGACCT
1 TGATAATTTGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCT
6135 GTTTCCAGTC
Statistics
Matches: 115, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
60 108 0.94
61 1 0.01
62 6 0.05
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (60 bp):
TGATAATTTGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTC
Found at i:6096 original size:22 final size:24
Alignment explanation
Indices: 6052--6096 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
6042 CAGTCGATCT
*
6052 TGATAATTGTTGAAAGATAACCTC
1 TGATAATTGTTGAAAGAGAACCTC
*
6076 TGATAA-T-TTGAAAGAGGACCT
1 TGATAATTGTTGAAAGAGAACCT
6097 GTTTCTAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 12 0.63
23 1 0.05
24 6 0.32
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (24 bp):
TGATAATTGTTGAAAGAGAACCTC
Found at i:6154 original size:158 final size:158
Alignment explanation
Indices: 5866--6232 Score: 635
Period size: 158 Copynumber: 2.3 Consensus size: 158
5856 TGACAAGTGC
* *
5866 TGAAAGATGACCTGTTTCCAGTCAATCTTGATAATTGTTGAAAGATAACCTCTGATAATTTGAAA
1 TGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTCTGATAATTTGAAA
* *
5931 GATGACATGTTTCCAGTCGATCTTGATAAGTGTTGAAAGATGACATGTTTCCAGTCGATCTTGAT
66 GAGGACATGTTTCCAGTCGATCTTGATAAGTGTTGAAAGATGACATGTTTCCAGTCAATCTTGAT
5996 AATTGTTGAAAGATAACCTCTGATAATT
131 AATTGTTGAAAGATAACCTCTGATAATT
6024 TGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTCTGATAATTTGAAA
1 TGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTCTGATAATTTGAAA
* * * *
6089 GAGGACCTGTTTCTAGTCGATCTTGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCTTGAT
66 GAGGACATGTTTCCAGTCGATCTTGATAAGTGTTGAAAGATGACATGTTTCCAGTCAATCTTGAT
6154 AATTGTTGAAAGATAACCTCTGATAATT
131 AATTGTTGAAAGATAACCTCTGATAATT
* * *
6182 TGAAAGATGACATGTTTCTAGTCGATCTTGATAACTGTTGAAAGATGACCT
1 TGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCT
6233 GTTTCCAGTC
Statistics
Matches: 198, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
158 198 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (158 bp):
TGAAAGATGACATGTTTCCAGTCGATCTTGATAATTGTTGAAAGATAACCTCTGATAATTTGAAA
GAGGACATGTTTCCAGTCGATCTTGATAAGTGTTGAAAGATGACATGTTTCCAGTCAATCTTGAT
AATTGTTGAAAGATAACCTCTGATAATT
Found at i:6167 original size:38 final size:38
Alignment explanation
Indices: 6076--6172 Score: 144
Period size: 38 Copynumber: 2.6 Consensus size: 38
6066 AGATAACCTC
* * *
6076 TGATAA-T-TTGAAAGAGGACCTGTTTCTAGTCGATCT
1 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCT
6112 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCT
1 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCT
*
6150 TGATAATTGTTGAAAGATAACCT
1 TGATAATTGTTGAAAGATGACCT
6173 CTGATAATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 6 0.11
37 1 0.02
38 48 0.87
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (38 bp):
TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCT
Found at i:6224 original size:38 final size:38
Alignment explanation
Indices: 6174--6308 Score: 193
Period size: 38 Copynumber: 3.6 Consensus size: 38
6164 AGATAACCTC
* *
6174 TGATAA-T-TTGAAAGATGACATGTTTCTAGTCGATCT
1 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCGATCT
*
6210 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCT
1 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCGATCT
* * *
6248 TGATCATTCTTGAAAGATGACCTGTTTCCAGTCAATCT
1 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCGATCT
*
6286 TGATAATTGTTGAAAGATAACCT
1 TGATAATTGTTGAAAGATGACCT
6309 CTGATAATTT
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
36 6 0.07
37 1 0.01
38 81 0.92
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (38 bp):
TGATAATTGTTGAAAGATGACCTGTTTCCAGTCGATCT
Found at i:6323 original size:22 final size:24
Alignment explanation
Indices: 6286--6330 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
6276 CAGTCAATCT
6286 TGATAATTGTTGAAAGATAACCTC
1 TGATAATTGTTGAAAGATAACCTC
*
6310 TGATAA-T-TTGAAAGATGACCT
1 TGATAATTGTTGAAAGATAACCT
6331 GTTTCCAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 1 0.05
24 6 0.30
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (24 bp):
TGATAATTGTTGAAAGATAACCTC
Found at i:6360 original size:38 final size:37
Alignment explanation
Indices: 6310--6416 Score: 180
Period size: 38 Copynumber: 2.9 Consensus size: 37
6300 AGATAACCTC
*
6310 TGATAAT-TTGAAAGATGACCTGTTTCCAGTCTATCT
1 TGATAATGTTGAAAGATGACCTGTTTCCAGTCGATCT
6346 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCT
1 TGATAA-TGTTGAAAGATGACCTGTTTCCAGTCGATCT
6384 TGATAATTGTTGAAAGATGACCTGTTTCCAGTC
1 TGATAA-TGTTGAAAGATGACCTGTTTCCAGTC
6417 AACTTTTGAT
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
36 6 0.09
37 1 0.01
38 60 0.90
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (37 bp):
TGATAATGTTGAAAGATGACCTGTTTCCAGTCGATCT
Found at i:6438 original size:39 final size:38
Alignment explanation
Indices: 6310--6446 Score: 179
Period size: 38 Copynumber: 3.6 Consensus size: 38
6300 AGATAACCTC
*
6310 TGATAA-T-TTGAAAGATGACCTGTTTCCAGTCTATCT
1 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCT
* *
6346 TGATAACTGTTGAAAGATGACCTGTTTCCAGTCGATCT
1 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCT
*
6384 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAACTTT
1 TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAA-TCT
* ** *
6423 TGATGATTGCCGAAAGGTGACCTG
1 TGATAATTGTTGAAAGATGACCTG
6447 AAAGGGACCA
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
36 6 0.07
37 1 0.01
38 61 0.68
39 22 0.24
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (38 bp):
TGATAATTGTTGAAAGATGACCTGTTTCCAGTCAATCT
Found at i:8247 original size:14 final size:13
Alignment explanation
Indices: 8228--8275 Score: 60
Period size: 14 Copynumber: 3.5 Consensus size: 13
8218 ACCCGAAACC
8228 TTTTGAAAACTCAT
1 TTTTGAAAAC-CAT
*
8242 TTTTGAAAACCTT
1 TTTTGAAAACCAT
*
8255 TTCTTGAAAACAAT
1 TT-TTGAAAACCAT
8269 TTTTGAA
1 TTTTGAA
8276 TAATGTCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
13 9 0.30
14 21 0.70
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.44
Consensus pattern (13 bp):
TTTTGAAAACCAT
Found at i:12332 original size:62 final size:61
Alignment explanation
Indices: 12250--12470 Score: 221
Period size: 62 Copynumber: 3.6 Consensus size: 61
12240 GTGTGACTGG
* * * *
12250 ACTGACCCTTTATCCGAAAGGGTATTCTGGGAAATTGAAACTATATGCGAGGATGTGGCAAA
1 ACTGACCCTTTGTCCAAAAGGGTATTTTGGGAAATTGAAACTATATGC-AGGATGTGACAAA
* * ** *
12312 ACTGACCCTCTGTCCAAAAGGGTATTTTGGGAAATAGAAACTATACACTAGGATGTAACAAA
1 ACTGACCCTTTGTCCAAAAGGGTATTTTGGGAAATTGAAACTATATGC-AGGATGTGACAAA
* ** * * *
12374 ACTGGCCCTTTGTCTGAAAGGGTATTTTGGGAATACT-AAACTTAAATGCAGGAATGTGACGAA
1 ACTGACCCTTTGTCCAAAAGGGTATTTTGGGAA-ATTGAAAC-TATATGCAGG-ATGTGACAAA
**
12437 ACT-AGCCCTTTGTCCAAAAGGGCGTTTTGGGAAA
1 ACTGA-CCCTTTGTCCAAAAGGGTATTTTGGGAAA
12471 ACTAGAACCT
Statistics
Matches: 129, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
62 89 0.69
63 40 0.31
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (61 bp):
ACTGACCCTTTGTCCAAAAGGGTATTTTGGGAAATTGAAACTATATGCAGGATGTGACAAA
Found at i:12465 original size:63 final size:64
Alignment explanation
Indices: 12317--12497 Score: 179
Period size: 63 Copynumber: 2.9 Consensus size: 64
12307 GCAAAACTGA
* * * * ** * * * * *
12317 CCCTCTGTCCAAAAGGGTATTTTGGG-AAA-TAGAAACTATACACTAGGATGTAACAAAACTGG
1 CCCTTTGTCCAAAAGGGCATTTTGGGAAAACTAGAACCTAAATGCAAGAATGTGACGAAACTAG
** * * * *
12379 CCCTTTGTCTGAAAGGGTATTTTGGGAATACTA-AACTTAAATGCAGGAATGTGACGAAACTAG
1 CCCTTTGTCCAAAAGGGCATTTTGGGAAAACTAGAACCTAAATGCAAGAATGTGACGAAACTAG
*
12442 CCCTTTGTCCAAAAGGGCGTTTTGGGAAAACTAGAACCTAAATGCAAGAATGTGAC
1 CCCTTTGTCCAAAAGGGCATTTTGGGAAAACTAGAACCTAAATGCAAGAATGTGAC
12498 AAAAATCGAA
Statistics
Matches: 94, Mismatches: 22, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
62 23 0.24
63 49 0.52
64 22 0.23
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (64 bp):
CCCTTTGTCCAAAAGGGCATTTTGGGAAAACTAGAACCTAAATGCAAGAATGTGACGAAACTAG
Found at i:12614 original size:49 final size:48
Alignment explanation
Indices: 12557--12685 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 48
12547 CTTTGTCTGA
*
12557 AAGGGCGTTTTGGGAAAAAGCAGGTAAAAACAAGTGCCTTCCATCTGGG
1 AAGGGCGTTTTGGG-AAAAGCAGGTAAAAACAAGTGCCTTCCATCCGGG
* ** *
12606 AAGGGCGTTTTAGGGAAAAGCAAGTAAAAATTAGTGCCTTCCGTCCGGG
1 AAGGGCGTTTT-GGGAAAAGCAGGTAAAAACAAGTGCCTTCCATCCGGG
* *
12655 AAGGGCATTTTGGGGGAAAGCAGGTAAAAAC
1 AAGGGCGTTTT-GGGAAAAGCAGGTAAAAAC
12686 TGAAAATTGA
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
49 66 0.96
50 3 0.04
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.20
Consensus pattern (48 bp):
AAGGGCGTTTTGGGAAAAGCAGGTAAAAACAAGTGCCTTCCATCCGGG
Found at i:17039 original size:26 final size:26
Alignment explanation
Indices: 17010--17059 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
17000 TTAGGGTCAC
17010 CTAAGGGCT-TTTTGGACATTTTTACA
1 CTAAGGG-TATTTTGGACATTTTTACA
*
17036 CTAAGGGTATTTTGGTCATTTTTA
1 CTAAGGGTATTTTGGACATTTTTA
17060 GTCTATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.46
Consensus pattern (26 bp):
CTAAGGGTATTTTGGACATTTTTACA
Found at i:17344 original size:18 final size:17
Alignment explanation
Indices: 17323--17356 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
17313 TGCCACTTTA
17323 AAAAGTACAAAAAAAATG
1 AAAAGTA-AAAAAAAATG
*
17341 AAAATTAAAAAAAAAT
1 AAAAGTAAAAAAAAAT
17357 CACAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (17 bp):
AAAAGTAAAAAAAAATG
Found at i:23853 original size:11 final size:11
Alignment explanation
Indices: 23824--23874 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
23814 ACACAATCTA
* *
23824 TATATTTATGT
1 TATATTAATAT
*
23835 TATTTTAATAT
1 TATATTAATAT
23846 TATATTAATAT
1 TATATTAATAT
*
23857 TTTAATTAAT-T
1 TAT-ATTAATAT
23868 TATATTA
1 TATATTA
23875 GGGAGCTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
10 4 0.12
11 23 0.70
12 6 0.18
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATATTAATAT
Found at i:24658 original size:15 final size:16
Alignment explanation
Indices: 24624--24673 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
24614 AATTCATTGT
*
24624 TTAAAAATTTCAGTAC
1 TTAAAAATTTCAATAC
24640 -TAAAAA-TTCAATAC
1 TTAAAAATTTCAATAC
** *
24654 TTAAATCTTTCAACAC
1 TTAAAAATTTCAATAC
24670 TTAA
1 TTAA
24674 TTTTCAGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 7 0.25
15 10 0.36
16 11 0.39
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.36
Consensus pattern (16 bp):
TTAAAAATTTCAATAC
Found at i:26506 original size:2 final size:2
Alignment explanation
Indices: 26501--26527 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26491 TGTGTGTGTG
26501 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
26528 TTGAAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29348 original size:6 final size:6
Alignment explanation
Indices: 29337--29366 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
29327 CTTATTACCC
29337 CATAAT CATAAT CATAAT CATAAT CATAAT
1 CATAAT CATAAT CATAAT CATAAT CATAAT
29367 TTTCTTCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CATAAT
Found at i:31021 original size:16 final size:16
Alignment explanation
Indices: 30996--31026 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30986 AGGGACCTTT
30996 ATTTTATCTTTTTTTA
1 ATTTTATCTTTTTTTA
*
31012 ATTTTTTCTTTTTTT
1 ATTTTATCTTTTTTT
31027 TTTAAGTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (16 bp):
ATTTTATCTTTTTTTA
Found at i:32684 original size:11 final size:11
Alignment explanation
Indices: 32668--32711 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
32658 CCATGTAGAC
32668 GCCACGTGGAT
1 GCCACGTGGAT
*
32679 GCCACGTGGAC
1 GCCACGTGGAT
* *
32690 ACCATGTGGAT
1 GCCACGTGGAT
*
32701 GCTACGTGGAT
1 GCCACGTGGAT
32712 TTCATCCCAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.20, C:0.25, G:0.34, T:0.20
Consensus pattern (11 bp):
GCCACGTGGAT
Found at i:32691 original size:33 final size:33
Alignment explanation
Indices: 32649--32711 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
32639 TTAAATGATG
32649 ACGTGGACACCATGTAGACGCCACGTGGATGCC
1 ACGTGGACACCATGTAGACGCCACGTGGATGCC
* * *
32682 ACGTGGACACCATGTGGATGCTACGTGGAT
1 ACGTGGACACCATGTAGACGCCACGTGGAT
32712 TTCATCCCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.24, C:0.25, G:0.32, T:0.19
Consensus pattern (33 bp):
ACGTGGACACCATGTAGACGCCACGTGGATGCC
Found at i:33121 original size:2 final size:2
Alignment explanation
Indices: 33114--33138 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33104 AGCTTCTTGC
33114 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
33139 GTGTGTGTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33445 original size:16 final size:16
Alignment explanation
Indices: 33426--33486 Score: 77
Period size: 16 Copynumber: 3.8 Consensus size: 16
33416 CTTTATGTGC
33426 ATATATGTAAATGTAT
1 ATATATGTAAATGTAT
*
33442 ATATATGTATATGTAT
1 ATATATGTAAATGTAT
* * * *
33458 GTACATATATATGTAT
1 ATATATGTAAATGTAT
33474 ATATATGTAAATG
1 ATATATGTAAATG
33487 AAGGAAGACA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.41, C:0.02, G:0.13, T:0.44
Consensus pattern (16 bp):
ATATATGTAAATGTAT
Found at i:33449 original size:10 final size:10
Alignment explanation
Indices: 33436--33482 Score: 67
Period size: 10 Copynumber: 4.5 Consensus size: 10
33426 ATATATGTAA
33436 ATGTATATAT
1 ATGTATATAT
*
33446 ATGTATATGT
1 ATGTATATAT
33456 ATGTACATATAT
1 ATGT--ATATAT
33468 ATGTATATAT
1 ATGTATATAT
33478 ATGTA
1 ATGTA
33483 AATGAAGGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 24 0.73
12 9 0.27
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (10 bp):
ATGTATATAT
Found at i:33452 original size:22 final size:21
Alignment explanation
Indices: 33427--33483 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 21
33417 TTTATGTGCA
33427 TATATGTAAATGT-ATATATATG
1 TATATGT--ATGTAATATATATG
33449 TATATGTATGTACATATATATG
1 TATATGTATGTA-ATATATATG
*
33471 TATATATATGTAA
1 TATATGTATGTAA
33484 ATGAAGGAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 4 0.12
21 1 0.03
22 27 0.84
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (21 bp):
TATATGTATGTAATATATATG
Found at i:35411 original size:31 final size:29
Alignment explanation
Indices: 35373--35439 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 29
35363 TCCGTTTAAA
* *
35373 TATATCCTGATTTGGTCGTTTCATGTAACGT
1 TATATCCTGAATTGGT-GTTTC-TGGAACGT
35404 TATATCCTGAATTGGTGTTTCTGGAACGT
1 TATATCCTGAATTGGTGTTTCTGGAACGT
35433 TATATCC
1 TATATCC
35440 CAAATTGATC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 14 0.41
30 5 0.15
31 15 0.44
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.43
Consensus pattern (29 bp):
TATATCCTGAATTGGTGTTTCTGGAACGT
Found at i:35445 original size:29 final size:31
Alignment explanation
Indices: 35384--35446 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
35374 ATATCCTGAT
* **
35384 TTGGTCGTTTCATGTAACGTTATATCCTGAA
1 TTGGTCGTTTCATGGAACGTTATATCCCAAA
35415 TTGGT-GTTTC-TGGAACGTTATATCCCAAA
1 TTGGTCGTTTCATGGAACGTTATATCCCAAA
35444 TTG
1 TTG
35447 ATCCGCGCGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 19 0.66
30 5 0.17
31 5 0.17
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (31 bp):
TTGGTCGTTTCATGGAACGTTATATCCCAAA
Found at i:35685 original size:2 final size:2
Alignment explanation
Indices: 35680--35714 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
35670 TGTGTGTGTG
35680 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
35715 TGCTTATGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:37855 original size:8 final size:8
Alignment explanation
Indices: 37842--37884 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
37832 TTCTACTGAG
37842 TTTTCTTC
1 TTTTCTTC
37850 TTTTCTTC
1 TTTTCTTC
37858 TTTTCATT-
1 TTTTC-TTC
37866 TTCTTCTTC
1 TT-TTCTTC
*
37875 TATTCTTC
1 TTTTCTTC
37883 TT
1 TT
37885 CTCTGTTTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
8 24 0.80
9 6 0.20
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTTCTTC
Found at i:37869 original size:11 final size:14
Alignment explanation
Indices: 37844--37886 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
37834 CTACTGAGTT
*
37844 TTCTTCTTTTCTTC
1 TTCTTCTATTCTTC
37858 TT-TTC-ATT-TTC
1 TTCTTCTATTCTTC
37869 TTCTTCTATTCTTC
1 TTCTTCTATTCTTC
37883 TTCT
1 TTCT
37887 CTGTTTCGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
11 5 0.20
12 5 0.20
13 6 0.24
14 9 0.36
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.70
Consensus pattern (14 bp):
TTCTTCTATTCTTC
Found at i:40869 original size:7 final size:7
Alignment explanation
Indices: 40857--40896 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
40847 GTGACTTGTC
40857 TTCTTTT
1 TTCTTTT
40864 TTCTTTT
1 TTCTTTT
40871 TTC---T
1 TTCTTTT
*
40875 CTCTTTT
1 TTCTTTT
40882 TTCTTTT
1 TTCTTTT
40889 TTCTTTT
1 TTCTTTT
40896 T
1 T
40897 AGTTAACCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
4 3 0.11
7 25 0.89
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (7 bp):
TTCTTTT
Found at i:40881 original size:18 final size:18
Alignment explanation
Indices: 40858--40892 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
40848 TGACTTGTCT
40858 TCTTTTTTCTTTTTTCTC
1 TCTTTTTTCTTTTTTCTC
40876 TCTTTTTTCTTTTTTCT
1 TCTTTTTTCTTTTTTCT
40893 TTTTAGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (18 bp):
TCTTTTTTCTTTTTTCTC
Found at i:41901 original size:9 final size:9
Alignment explanation
Indices: 41887--41925 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
41877 TTAATTTCTT
*
41887 TTAATTTAA
1 TTAATTAAA
41896 TTAATTAAA
1 TTAATTAAA
**
41905 TTAAAGAAA
1 TTAATTAAA
41914 TTAATTAAA
1 TTAATTAAA
41923 TTA
1 TTA
41926 TGTTGAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (9 bp):
TTAATTAAA
Found at i:41970 original size:17 final size:17
Alignment explanation
Indices: 41948--41981 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
41938 ATTTGGGCCG
41948 CCCATCTACTATACAGA
1 CCCATCTACTATACAGA
*
41965 CCCATCTACTGTACAGA
1 CCCATCTACTATACAGA
41982 TTGGATCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.35, G:0.09, T:0.24
Consensus pattern (17 bp):
CCCATCTACTATACAGA
Found at i:42037 original size:29 final size:29
Alignment explanation
Indices: 41991--42053 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
41981 ATTGGATCTG
41991 GATTGGGTCTGGAAGGCCCATGCCCCTGA
1 GATTGGGTCTGGAAGGCCCATGCCCCTGA
*
42020 GATTGGGTCTGGACGGCCCATGCCCCTGA
1 GATTGGGTCTGGAAGGCCCATGCCCCTGA
*
42049 AATTG
1 GATTG
42054 AAATCAGGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.22
Consensus pattern (29 bp):
GATTGGGTCTGGAAGGCCCATGCCCCTGA
Found at i:44167 original size:15 final size:15
Alignment explanation
Indices: 44141--44199 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
44131 TGCTAGGGTG
*
44141 AATGGCGCAAACAAC
1 AATGGTGCAAACAAC
* *
44156 AACGGTGCAAACCAC
1 AATGGTGCAAACAAC
*
44171 AATGGTGCAAACCAC
1 AATGGTGCAAACAAC
*
44186 AATGGTGCGAACAA
1 AATGGTGCAAACAA
44200 TCATGTTGTG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.42, C:0.25, G:0.22, T:0.10
Consensus pattern (15 bp):
AATGGTGCAAACAAC
Found at i:56734 original size:9 final size:9
Alignment explanation
Indices: 56720--56758 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
56710 TTAATTTCTT
*
56720 TTAATTTAA
1 TTAATTAAA
56729 TTAATTAAA
1 TTAATTAAA
**
56738 TTAAAGAAA
1 TTAATTAAA
56747 TTAATTAAA
1 TTAATTAAA
56756 TTA
1 TTA
56759 TGTTGAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (9 bp):
TTAATTAAA
Found at i:60760 original size:6 final size:6
Alignment explanation
Indices: 60741--60769 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
60731 AAAGACATCG
60741 TTATAT TT-TAT TTATAT TTATAT TTATAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT
60770 AATAATAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTATAT
Found at i:63066 original size:21 final size:21
Alignment explanation
Indices: 63042--63086 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
63032 CACCACTCCT
63042 AGACAAAATCAGCAA-AATGGA
1 AGACAAAATC-GCAACAATGGA
**
63063 AGACAAGCTCGCAACAATGGA
1 AGACAAAATCGCAACAATGGA
63084 AGA
1 AGA
63087 AGATAAACGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.51, C:0.18, G:0.22, T:0.09
Consensus pattern (21 bp):
AGACAAAATCGCAACAATGGA
Found at i:69501 original size:28 final size:27
Alignment explanation
Indices: 69470--69642 Score: 163
Period size: 28 Copynumber: 6.3 Consensus size: 27
69460 TTAGCACTAA
69470 AAATAAAATTTCCAAAGGCATACAGCC
1 AAATAAAATTTCCAAAGGCATACAGCC
*
69497 TAAATAAAATTTCCAAAGGCATGCAG-C
1 -AAATAAAATTTCCAAAGGCATACAGCC
* *
69524 AAATAAAATCTCTAAAGGCATACAGCC
1 AAATAAAATTTCCAAAGGCATACAGCC
* *
69551 GAAATAAAATCTCTAAAGGCATACAGCC
1 -AAATAAAATTTCCAAAGGCATACAGCC
* * *
69579 GAGATGAAACTCTT--AAAGGCATACGGCC
1 -AAAT-AAAAT-TTCCAAAGGCATACAGCC
* * *
69607 TATACAAAATTTCCATAGGCATACAGCC
1 -AAATAAAATTTCCAAAGGCATACAGCC
69635 AATATAAA
1 AA-ATAAA
69643 GCCCAAACGG
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
26 24 0.20
27 7 0.06
28 86 0.70
29 4 0.03
30 1 0.01
ACGTcount: A:0.45, C:0.21, G:0.14, T:0.20
Consensus pattern (27 bp):
AAATAAAATTTCCAAAGGCATACAGCC
Found at i:69530 original size:54 final size:53
Alignment explanation
Indices: 69470--69638 Score: 169
Period size: 54 Copynumber: 3.1 Consensus size: 53
69460 TTAGCACTAA
*
69470 AAATAAAATTTCCAAAGGCATACAGCCTAAATAAAATTTCCAAAGGCATGCAGC
1 AAATAAAATTT-CAAAGGCATACAGCCTAAATAAAATTTCCAAAGGCATACAGC
* * * *
69524 AAATAAAATCTCTAAAGGCATACAGCCGAAATAAAATCTCTAAAGGCATACAGCC
1 AAATAAAATTTC-AAAGGCATACAGCCTAAATAAAATTTCCAAAGGCATACAG-C
* * * * * *
69579 GAGATGAAACTCTT-AAAGGCATACGGCCTATACAAAATTTCCATAGGCATACAGC
1 -AAAT-AAAAT-TTCAAAGGCATACAGCCTAAATAAAATTTCCAAAGGCATACAGC
*
69634 CAATA
1 AAATA
69639 TAAAGCCCAA
Statistics
Matches: 93, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
53 2 0.02
54 48 0.52
55 2 0.02
56 36 0.39
57 4 0.04
58 1 0.01
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.20
Consensus pattern (53 bp):
AAATAAAATTTCAAAGGCATACAGCCTAAATAAAATTTCCAAAGGCATACAGC
Found at i:82153 original size:18 final size:19
Alignment explanation
Indices: 82117--82157 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
82107 TCCTAAGTAA
*
82117 TTTTTATTCATTTTCTTTC
1 TTTTCATTCATTTTCTTTC
*
82136 TTTTCATTCCTTTT-TTTC
1 TTTTCATTCATTTTCTTTC
82154 TTTT
1 TTTT
82158 GCCATTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTCATTCATTTTCTTTC
Found at i:85879 original size:27 final size:27
Alignment explanation
Indices: 85849--85900 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
85839 CTAATCTTGG
* *
85849 AGAAAGAAAGGATCTTAGTGATCAAAT
1 AGAAAGAAACGATCATAGTGATCAAAT
*
85876 AGAAAGCAACGATCATAGTGATCAA
1 AGAAAGAAACGATCATAGTGATCAA
85901 GTTGTTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.48, C:0.12, G:0.21, T:0.19
Consensus pattern (27 bp):
AGAAAGAAACGATCATAGTGATCAAAT
Found at i:88042 original size:29 final size:27
Alignment explanation
Indices: 87999--88077 Score: 86
Period size: 29 Copynumber: 2.9 Consensus size: 27
87989 GCATTAGGGT
*
87999 CATCCAGGGGCATTTTGGTCATTTTCA
1 CATCTAGGGGCATTTTGGTCATTTTCA
* **
88026 CATCTAGGGGGGCATTTTGGCCATTTTTG
1 CATCTA--GGGGCATTTTGGTCATTTTCA
* *
88055 CATTTAGGGGTATTTTGGTCATT
1 CATCTAGGGGCATTTTGGTCATT
88078 CTTAATCTAC
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
27 20 0.47
29 23 0.53
ACGTcount: A:0.16, C:0.16, G:0.27, T:0.41
Consensus pattern (27 bp):
CATCTAGGGGCATTTTGGTCATTTTCA
Found at i:91732 original size:7 final size:7
Alignment explanation
Indices: 91720--91745 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
91710 ATAGTAAATT
91720 AGTAATC
1 AGTAATC
91727 AGTAATC
1 AGTAATC
91734 AGTAATC
1 AGTAATC
91741 AGTAA
1 AGTAA
91746 AAAGAGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (7 bp):
AGTAATC
Found at i:91770 original size:27 final size:26
Alignment explanation
Indices: 91738--91866 Score: 147
Period size: 27 Copynumber: 4.9 Consensus size: 26
91728 GTAATCAGTA
91738 ATCAGTAAAAAGAGTAAGAAAAGAGCC
1 ATCAGTAAAAAGAGTAAGAAAAGAG-C
* *
91765 ATCAGTAAAAAGAGTAAG-AAACAGT
1 ATCAGTAAAAAGAGTAAGAAAAGAGC
*
91790 ATTCAGTAAAAAGAATAAGAAAAGAGTC
1 A-TCAGTAAAAAGAGTAAGAAAAGAG-C
* *
91818 ATCAGTAAAAAGAGTAGGAAATA-A-T
1 ATCAGTAAAAAGAGTAAGAAA-AGAGC
91843 ATTCAGTAAAAAGAGTAAGAAAAG
1 A-TCAGTAAAAAGAGTAAGAAAAG
91867 CGCGATAGTA
Statistics
Matches: 87, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
25 3 0.03
26 40 0.46
27 42 0.48
28 2 0.02
ACGTcount: A:0.57, C:0.07, G:0.20, T:0.16
Consensus pattern (26 bp):
ATCAGTAAAAAGAGTAAGAAAAGAGC
Found at i:91790 original size:53 final size:53
Alignment explanation
Indices: 91733--91866 Score: 214
Period size: 53 Copynumber: 2.5 Consensus size: 53
91723 AATCAGTAAT
*
91733 CAGTAATCAGTAAAAAGAGTAAGAAAAGAGCCATCAGTAAAAAGAGTAAGAAA
1 CAGTATTCAGTAAAAAGAGTAAGAAAAGAGCCATCAGTAAAAAGAGTAAGAAA
* * *
91786 CAGTATTCAGTAAAAAGAATAAGAAAAGAGTCATCAGTAAAAAGAGTAGGAAA
1 CAGTATTCAGTAAAAAGAGTAAGAAAAGAGCCATCAGTAAAAAGAGTAAGAAA
* *
91839 TAATATTCAGTAAAAAGAGTAAGAAAAG
1 CAGTATTCAGTAAAAAGAGTAAGAAAAG
91867 CGCGATAGTA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 74 1.00
ACGTcount: A:0.56, C:0.07, G:0.20, T:0.16
Consensus pattern (53 bp):
CAGTATTCAGTAAAAAGAGTAAGAAAAGAGCCATCAGTAAAAAGAGTAAGAAA
Found at i:91795 original size:26 final size:25
Alignment explanation
Indices: 91733--91864 Score: 138
Period size: 26 Copynumber: 5.0 Consensus size: 25
91723 AATCAGTAAT
91733 CAGTAATCAGTAAAAAGAGTAAGAAAA
1 CAGT-ATCAGTAAAAAGAGTAAG-AAA
* *
91760 GAGCCATCAGTAAAAAGAGTAAGAAA
1 CAG-TATCAGTAAAAAGAGTAAGAAA
*
91786 CAGTATTCAGTAAAAAGAATAAGAAAA
1 CAGTA-TCAGTAAAAAGAGTAAG-AAA
* *
91813 GAGTCATCAGTAAAAAGAGTAGGAAA
1 CAGT-ATCAGTAAAAAGAGTAAGAAA
* *
91839 TAATATTCAGTAAAAAGAGTAAGAAA
1 CAGTA-TCAGTAAAAAGAGTAAGAAA
91865 AGCGCGATAG
Statistics
Matches: 89, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
25 2 0.02
26 45 0.51
27 41 0.46
28 1 0.01
ACGTcount: A:0.56, C:0.08, G:0.20, T:0.17
Consensus pattern (25 bp):
CAGTATCAGTAAAAAGAGTAAGAAA
Found at i:91954 original size:7 final size:7
Alignment explanation
Indices: 91944--92105 Score: 61
Period size: 7 Copynumber: 23.0 Consensus size: 7
91934 AAAGGCAATC
91944 AGTAAAG
1 AGTAAAG
91951 AGTAAA-
1 AGTAAAG
*
91957 ATGGTAAAA
1 A--GTAAAG
**
91966 AGTAATC
1 AGTAAAG
91973 AGTAAAG
1 AGTAAAG
91980 AG-AAATG
1 AGTAAA-G
91987 -GTAAAG
1 AGTAAAG
91993 AGTAATAG
1 AGTAA-AG
**
92001 AGTAATC
1 AGTAAAG
*
92008 AGTGAAG
1 AGTAAAG
*
92015 A-AAAATG
1 AGTAAA-G
92022 -GTAAAG
1 AGTAAAG
92028 AGTAAAG
1 AGTAAAG
**
92035 AGTAATC
1 AGTAAAG
92042 AGTAAAG
1 AGTAAAG
*
92049 -G-AAAA
1 AGTAAAG
92054 ATGGTAAAG
1 A--GTAAAG
* *
92063 AATGAAG
1 AGTAAAG
**
92070 AGTAATT
1 AGTAAAG
92077 AGTAAA-
1 AGTAAAG
92083 ATGGTAAAG
1 A--GTAAAG
92092 AGTAAAG
1 AGTAAAG
92099 AGTAAAG
1 AGTAAAG
92106 TAAAGAGAGA
Statistics
Matches: 113, Mismatches: 25, Indels: 34
0.66 0.15 0.20
Matches are distributed among these distances:
5 3 0.03
6 11 0.10
7 75 0.66
8 18 0.16
9 6 0.05
ACGTcount: A:0.54, C:0.02, G:0.25, T:0.19
Consensus pattern (7 bp):
AGTAAAG
Found at i:91965 original size:29 final size:27
Alignment explanation
Indices: 91933--91991 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 27
91923 GTAAAAATTG
*
91933 AAAAGGCAATCAGTAAAGAGTAAAATGGT
1 AAAAAGCAATCAGTAAAGAG--AAATGGT
*
91962 AAAAAGTAATCAGTAAAGAGAAATGGT
1 AAAAAGCAATCAGTAAAGAGAAATGGT
91989 AAA
1 AAA
91992 GAGTAATAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 10 0.36
29 18 0.64
ACGTcount: A:0.56, C:0.05, G:0.22, T:0.17
Consensus pattern (27 bp):
AAAAAGCAATCAGTAAAGAGAAATGGT
Found at i:91996 original size:27 final size:28
Alignment explanation
Indices: 91940--91998 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
91930 TTGAAAAGGC
91940 AATCAGTAAAGAGTAAAATGGTAAAAAGT
1 AATCAGTAAAGAG-AAAATGGTAAAAAGT
*
91969 AATCAGTAAAGAG-AAATGGTAAAGAGT
1 AATCAGTAAAGAGAAAATGGTAAAAAGT
91996 AAT
1 AAT
91999 AGAGTAATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 16 0.55
29 13 0.45
ACGTcount: A:0.54, C:0.03, G:0.22, T:0.20
Consensus pattern (28 bp):
AATCAGTAAAGAGAAAATGGTAAAAAGT
Found at i:92005 original size:35 final size:34
Alignment explanation
Indices: 91960--92111 Score: 183
Period size: 35 Copynumber: 4.6 Consensus size: 34
91950 GAGTAAAATG
* *
91960 GTAAAAAGTAATCAGTAAAGAGAAATGGTAAAGA
1 GTAAAGAGTAATCAGTAAAGAAAAATGGTAAAGA
*
91994 GTAATAGAGTAATCAGTGAAGAAAAATGGTAAAGA
1 GTAA-AGAGTAATCAGTAAAGAAAAATGGTAAAGA
92029 GTAAAGAGTAATCAGTAAAGGAAAAATGGTAAAGA
1 GTAAAGAGTAATCAGTAAA-GAAAAATGGTAAAGA
* * *
92064 ATGAAGAGTAAT---T--AGTAAAATGGTAAAGA
1 GTAAAGAGTAATCAGTAAAGAAAAATGGTAAAGA
92093 GTAAAGAGTAA--AGTAAAGA
1 GTAAAGAGTAATCAGTAAAGA
92112 GAGATCAGTA
Statistics
Matches: 102, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
29 23 0.23
30 2 0.02
32 3 0.03
34 18 0.18
35 56 0.55
ACGTcount: A:0.54, C:0.02, G:0.25, T:0.19
Consensus pattern (34 bp):
GTAAAGAGTAATCAGTAAAGAAAAATGGTAAAGA
Found at i:92139 original size:47 final size:45
Alignment explanation
Indices: 92080--92196 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 45
92070 AGTAATTAGT
92080 AAAATGGTAAAGAGTAAAGAGTAAAGTAAAGAGAGATCAGTAAA-AA
1 AAAATGGTAAAGAGTAAAGAGTAAAGTAAAG-GA-ATCAGTAAAGAA
*
92126 AGAAATGGTAAAGAGT-AA-AGT-AA--AAAGTAATCAGTAAAGAA
1 A-AAATGGTAAAGAGTAAAGAGTAAAGTAAAGGAATCAGTAAAGAA
**
92167 AAAATGGTAATCAGTAAAGAGTAATAGTAA
1 AAAATGGTAAAGAGTAAAGAGTAA-AGTAA
92197 TCAGTAAGAA
Statistics
Matches: 60, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
40 21 0.35
41 6 0.10
42 7 0.12
43 1 0.02
44 3 0.05
45 3 0.05
46 5 0.08
47 14 0.23
ACGTcount: A:0.57, C:0.03, G:0.22, T:0.18
Consensus pattern (45 bp):
AAAATGGTAAAGAGTAAAGAGTAAAGTAAAGGAATCAGTAAAGAA
Found at i:92144 original size:40 final size:40
Alignment explanation
Indices: 92093--92397 Score: 160
Period size: 40 Copynumber: 7.3 Consensus size: 40
92083 ATGGTAAAGA
*
92093 GTAAAGAGTAAAGTAAAGAG-AGATCAGTAAA-AAAGAAATG
1 GTAAAGAGTAAAGTAAAAAGTA-ATCAGTAAAGAAA-AAATG
92133 GTAAAGAGTAAAGTAAAAAGTAATCAGTAAAGAAAAAATG
1 GTAAAGAGTAAAGTAAAAAGTAATCAGTAAAGAAAAAATG
** * **
92173 GTAATCAGTAAAG-AGTAATAGTAATCAGT-AAGAAGTAATG
1 GTAAAGAGTAAAGTA--AAAAGTAATCAGTAAAGAAAAAATG
** *
92213 GTAATTAGTAAAAAGTAAAAAGGTAATCAATAAA-AAGTAAAATG
1 GTAAAGAGT--AAAGTAAAAA-GTAATCAGTAAAGAA--AAAATG
** * * *
92257 GTAATTAGTAAAAAGT-AAAGGTAATCAGTGAAA-AGCAAAATA
1 GTAAAGAGT--AAAGTAAAAAGTAATCAGT-AAAGA-AAAAATG
* *
92299 GTAATTAGA-AAAGAGTAAAAGGGTAATCAGTAAA-AAGTAAAATG
1 GTAA--AGAGTAA-AGTAAAA-AGTAATCAGTAAAGAA--AAAATG
** * *
92343 GTAATTAGTAAAAAGTAAAGAGTAATCAGTAAAGGAAAACAATA
1 GTAAAGAGT--AAAGTAAAAAGTAATCAGTAAA-GAAAA-AATG
92387 GTAAAGAGTAA
1 GTAAAGAGTAA
92398 TCAGTAAAGA
Statistics
Matches: 211, Mismatches: 28, Indels: 50
0.73 0.10 0.17
Matches are distributed among these distances:
39 1 0.00
40 61 0.29
41 21 0.10
42 37 0.18
43 31 0.15
44 56 0.27
45 4 0.02
ACGTcount: A:0.56, C:0.03, G:0.21, T:0.20
Consensus pattern (40 bp):
GTAAAGAGTAAAGTAAAAAGTAATCAGTAAAGAAAAAATG
Found at i:92238 original size:8 final size:7
Alignment explanation
Indices: 92219--92367 Score: 52
Period size: 7 Copynumber: 20.7 Consensus size: 7
92209 AATGGTAATT
92219 AGTAAAA
1 AGTAAAA
92226 AGTAAAA
1 AGTAAAA
*
92233 AGGTAATCA
1 A-GTAA-AA
92242 A-TAAAA
1 AGTAAAA
92248 AGTAAAA
1 AGTAAAA
* **
92255 TGGTAATT
1 -AGTAAAA
92263 AGTAAAA
1 AGTAAAA
92270 AGT-AAA
1 AGTAAAA
* **
92276 GGTAATC
1 AGTAAAA
*
92283 AGTGAAA
1 AGTAAAA
*
92290 AGCAAAA
1 AGTAAAA
**
92297 TAGTAATT
1 -AGTAAAA
92305 AG-AAAA
1 AGTAAAA
92311 GAGTAAAA
1 -AGTAAAA
* **
92319 GGGTAATC
1 -AGTAAAA
92327 AGTAAAA
1 AGTAAAA
92334 AGTAAAA
1 AGTAAAA
* **
92341 TGGTAATT
1 -AGTAAAA
92349 AGTAAAA
1 AGTAAAA
*
92356 AGTAAAG
1 AGTAAAA
92363 AGTAA
1 AGTAA
92368 TCAGTAAAGG
Statistics
Matches: 98, Mismatches: 35, Indels: 18
0.65 0.23 0.12
Matches are distributed among these distances:
6 9 0.09
7 62 0.63
8 25 0.26
9 2 0.02
ACGTcount: A:0.57, C:0.03, G:0.19, T:0.21
Consensus pattern (7 bp):
AGTAAAA
Found at i:92246 original size:22 final size:22
Alignment explanation
Indices: 92142--92375 Score: 213
Period size: 22 Copynumber: 11.0 Consensus size: 22
92132 GGTAAAGAGT
92142 AAAGTAAAAA-GTAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
92163 AGAA--AAAATGGTAATCAGTAA
1 A-AAGTAAAAAGGTAATCAGTAA
* *
92184 AGAGT-AATA-GTAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
* * *
92204 GAAGT--AATGGTAATTAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
92224 AAAGTAAAAAGGTAATCAATAA
1 AAAGTAAAAAGGTAATCAGTAA
* *
92246 AAAGTAAAATGGTAATTAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
92268 AAAGT--AAAGGTAATCAGTGA
1 AAAGTAAAAAGGTAATCAGTAA
* *
92288 AAAGCAAAATA-GTAATTAG-AA
1 AAAGTAAAA-AGGTAATCAGTAA
*
92309 AAGAGTAAAAGGGTAATCAGTAA
1 AA-AGTAAAAAGGTAATCAGTAA
* *
92332 AAAGTAAAATGGTAATTAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
92354 AAAGTAAAGA-GTAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
92375 A
1 A
92376 GGAAAACAAT
Statistics
Matches: 170, Mismatches: 30, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
19 1 0.01
20 49 0.29
21 29 0.17
22 86 0.51
23 5 0.03
ACGTcount: A:0.56, C:0.03, G:0.19, T:0.22
Consensus pattern (22 bp):
AAAGTAAAAAGGTAATCAGTAA
Found at i:92412 original size:23 final size:23
Alignment explanation
Indices: 92386--92430 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
92376 GGAAAACAAT
*
92386 AGTAAAGAGTAATCAGTAAAGAG
1 AGTAAAAAGTAATCAGTAAAGAG
92409 AGTAAAAAGTAATCAGTAAAGA
1 AGTAAAAAGTAATCAGTAAAGA
92431 AAAAAATAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.56, C:0.04, G:0.22, T:0.18
Consensus pattern (23 bp):
AGTAAAAAGTAATCAGTAAAGAG
Found at i:92427 original size:30 final size:29
Alignment explanation
Indices: 92349--92420 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 29
92339 AATGGTAATT
92349 AGTAAAAAGTAAAGAGTAATCAGTAAAGG
1 AGTAAAAAGTAAAGAGTAATCAGTAAAGG
*
92378 A-AAACAATAGTAAAGAGTAATCAGTAAAGAG
1 AGTAA-AA-AGTAAAGAGTAATCAGTAAAG-G
92409 AGTAAAAAGTAA
1 AGTAAAAAGTAA
92421 TCAGTAAAGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
28 2 0.05
29 3 0.08
30 26 0.70
31 4 0.11
32 2 0.05
ACGTcount: A:0.58, C:0.04, G:0.21, T:0.17
Consensus pattern (29 bp):
AGTAAAAAGTAAAGAGTAATCAGTAAAGG
Found at i:95014 original size:12 final size:13
Alignment explanation
Indices: 94989--95022 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
94979 TTAATTATTG
94989 TTTGCTTTATTAA
1 TTTGCTTTATTAA
95002 TTTGCTTTA-TAA
1 TTTGCTTTATTAA
*
95014 TCTGCTTTA
1 TTTGCTTTA
95023 GATTTAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTGCTTTATTAA
Found at i:95030 original size:6 final size:6
Alignment explanation
Indices: 95019--95051 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
95009 TATAATCTGC
95019 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTT
1 TTTAGA TTTAGA TTTAGA TTTAGA TTTAGA TTT
95052 GCTTTGCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (6 bp):
TTTAGA
Found at i:96479 original size:68 final size:68
Alignment explanation
Indices: 96370--96512 Score: 286
Period size: 68 Copynumber: 2.1 Consensus size: 68
96360 GAGAAGACTA
96370 TTCAAGAGAAGGCCCTATAAGAAGAATTAATGAAGTTTCTACCTATTCCACCTCATTGGAGCAAC
1 TTCAAGAGAAGGCCCTATAAGAAGAATTAATGAAGTTTCTACCTATTCCACCTCATTGGAGCAAC
96435 AAC
66 AAC
96438 TTCAAGAGAAGGCCCTATAAGAAGAATTAATGAAGTTTCTACCTATTCCACCTCATTGGAGCAAC
1 TTCAAGAGAAGGCCCTATAAGAAGAATTAATGAAGTTTCTACCTATTCCACCTCATTGGAGCAAC
96503 AAC
66 AAC
96506 TTCAAGA
1 TTCAAGA
96513 AACGAATCAG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 75 1.00
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (68 bp):
TTCAAGAGAAGGCCCTATAAGAAGAATTAATGAAGTTTCTACCTATTCCACCTCATTGGAGCAAC
AAC
Found at i:102176 original size:12 final size:13
Alignment explanation
Indices: 102151--102184 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
102141 TTAATTATTG
102151 TTTGCTTTATTAA
1 TTTGCTTTATTAA
102164 TTTGCTTTA-TAA
1 TTTGCTTTATTAA
*
102176 TCTGCTTTA
1 TTTGCTTTA
102185 GATTTAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTGCTTTATTAA
Found at i:102879 original size:30 final size:30
Alignment explanation
Indices: 102843--102901 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
102833 ATGGCATCTT
*
102843 AATGGCATCTCCATGAGGCTTTGCGATTCG
1 AATGGCATCTCCATGAGACTTTGCGATTCG
102873 AATGGCATCTCCATGAGACTTTGCGATTC
1 AATGGCATCTCCATGAGACTTTGCGATTC
102902 CATTCTCTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.31
Consensus pattern (30 bp):
AATGGCATCTCCATGAGACTTTGCGATTCG
Found at i:111420 original size:21 final size:20
Alignment explanation
Indices: 111381--111422 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
111371 TCTTGCTCCT
*
111381 ATTGACTTCAATGCTCTTCA
1 ATTGACTTCAATGCACTTCA
*
111401 ATTGATCTTCAATGGACTTCA
1 ATTGA-CTTCAATGCACTTCA
111422 A
1 A
111423 ACCTTCAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (20 bp):
ATTGACTTCAATGCACTTCA
Found at i:111568 original size:30 final size:30
Alignment explanation
Indices: 111532--111589 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
111522 TGGCATCTTA
* *
111532 AATGGCATCTCCATGAGGCTTTGCGATTCC
1 AATGGCATCTCCACGAGACTTTGCGATTCC
111562 AATGGCATCTCCACGAGACTTTGCGATT
1 AATGGCATCTCCACGAGACTTTGCGATT
111590 ACATCCTCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (30 bp):
AATGGCATCTCCACGAGACTTTGCGATTCC
Found at i:112316 original size:13 final size:13
Alignment explanation
Indices: 112298--112331 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
112288 TTGATATAGA
*
112298 TATTTATTTTATT
1 TATTTATTTCATT
112311 TATTTATTTCATT
1 TATTTATTTCATT
112324 T-TTTATTT
1 TATTTATTT
112332 ATCTTTAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 7 0.35
13 13 0.65
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (13 bp):
TATTTATTTCATT
Found at i:112381 original size:23 final size:23
Alignment explanation
Indices: 112347--112398 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
112337 TAGAAAAATA
112347 TTCTTT-TCAATTA-TTTATTTAT
1 TTCTTTATCAATTATTTTA-TTAT
112369 TTCTTTATCAATTATTTTATTAT
1 TTCTTTATCAATTATTTTATTAT
112392 TT-TTTAT
1 TTCTTTAT
112399 TTTTCATAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 11 0.39
23 13 0.46
24 4 0.14
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (23 bp):
TTCTTTATCAATTATTTTATTAT
Found at i:115624 original size:6 final size:6
Alignment explanation
Indices: 115613--115652 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
115603 TTGACAACAT
*
115613 AACAAA AAC-AA AACAAA AAC-GA AACAAA AACAAA AA-AAA A
1 AACAAA AACAAA AACAAA AACAAA AACAAA AACAAA AACAAA A
115653 CGATGCCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
5 13 0.43
6 17 0.57
ACGTcount: A:0.82, C:0.15, G:0.03, T:0.00
Consensus pattern (6 bp):
AACAAA
Found at i:115627 original size:11 final size:11
Alignment explanation
Indices: 115608--115653 Score: 67
Period size: 11 Copynumber: 4.3 Consensus size: 11
115598 AAATTTTGAC
*
115608 AACATAACAAA
1 AACAAAACAAA
115619 AACAAAACAAA
1 AACAAAACAAA
*
115630 AACGAAACAAA
1 AACAAAACAAA
115641 AACAAAA-AAA
1 AACAAAACAAA
115651 AAC
1 AAC
115654 GATGCCAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
10 6 0.19
11 26 0.81
ACGTcount: A:0.78, C:0.17, G:0.02, T:0.02
Consensus pattern (11 bp):
AACAAAACAAA
Found at i:115662 original size:22 final size:22
Alignment explanation
Indices: 115613--115655 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
115603 TTGACAACAT
115613 AACAAAAACAAAACAAAAACGA
1 AACAAAAACAAAACAAAAACGA
115635 AACAAAAACAAAA-AAAAACGA
1 AACAAAAACAAAACAAAAACGA
115656 TGCCAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.79, C:0.16, G:0.05, T:0.00
Consensus pattern (22 bp):
AACAAAAACAAAACAAAAACGA
Found at i:117979 original size:44 final size:44
Alignment explanation
Indices: 117916--118004 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
117906 TAATGATTTC
117916 ATAGAGAAATAGTTGATTTCGATGATGGTAGGTTAAGCATAAAT
1 ATAGAGAAATAGTTGATTTCGATGATGGTAGGTTAAGCATAAAT
117960 ATAGAGAAATAGTTGATTTCGATGATGGTAGGTTAAGCATAAAT
1 ATAGAGAAATAGTTGATTTCGATGATGGTAGGTTAAGCATAAAT
118004 A
1 A
118005 CAAACGAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.39, C:0.04, G:0.25, T:0.31
Consensus pattern (44 bp):
ATAGAGAAATAGTTGATTTCGATGATGGTAGGTTAAGCATAAAT
Found at i:119834 original size:76 final size:76
Alignment explanation
Indices: 119708--119855 Score: 242
Period size: 76 Copynumber: 1.9 Consensus size: 76
119698 AAACCTCTAT
* * *
119708 AAATTAATAATGTTGGGACTATGAAAAATTATTAATTTAGAGAGATTATTAATTTATCGAGTGTT
1 AAATTAATAATGTTGGGACCATGAAAAATAATTAATTTAGAGAGATTATTAATTTATCGAGTATT
*
119773 AATTTATATGG
66 AAATTATATGG
* *
119784 AAATTAATAATGTTGGGACCATGAAAAATAATTAATTTAGAGAGGTTATTAATTTATCTAGTATT
1 AAATTAATAATGTTGGGACCATGAAAAATAATTAATTTAGAGAGATTATTAATTTATCGAGTATT
119849 AAATTAT
66 AAATTAT
119856 GGAGGTTTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 66 1.00
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.40
Consensus pattern (76 bp):
AAATTAATAATGTTGGGACCATGAAAAATAATTAATTTAGAGAGATTATTAATTTATCGAGTATT
AAATTATATGG
Found at i:125756 original size:28 final size:27
Alignment explanation
Indices: 125718--125791 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
125708 AAAATGGACA
* *
125718 AAAAATTACCAAAATGCCCCTTTAATGC
1 AAAAATGACCAAAATGCCCC-TGAATGC
* *
125746 AAAAATGACCAAAATACCCCTGAATGT
1 AAAAATGACCAAAATGCCCCTGAATGC
*
125773 AAAAATGCCCAAAATGCCC
1 AAAAATGACCAAAATGCCC
125792 TTGGATGACC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.46, C:0.26, G:0.09, T:0.19
Consensus pattern (27 bp):
AAAAATGACCAAAATGCCCCTGAATGC
Found at i:129563 original size:15 final size:15
Alignment explanation
Indices: 129543--129573 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
129533 TTGAAATTTA
*
129543 AACTTTACTTGACTT
1 AACTTTACTTCACTT
129558 AACTTTACTTCACTT
1 AACTTTACTTCACTT
129573 A
1 A
129574 CCTTCACCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.23, G:0.03, T:0.45
Consensus pattern (15 bp):
AACTTTACTTCACTT
Found at i:134437 original size:138 final size:138
Alignment explanation
Indices: 134189--134455 Score: 471
Period size: 138 Copynumber: 1.9 Consensus size: 138
134179 ATACTTTATT
* * * *
134189 CCCAAAATATTTCTCATTATCCCCAAAGACTTATATGCACCATCCCCAACCCGGTTTTTGGTATA
1 CCCAAAATATATCTCATTATACCCAAAAACTTATATGCACCATCCCCAACCCGATTTTTGGTATA
*
134254 AAGCTTATTCATATATACCCAAAACCAACTTTAAACATGATTTTCTTCCCAAAGTGGAGAATGGA
66 AAGCTTATTCATATATACCCAAAACCAACTTTAAACATGATTTTCTCCCCAAAGTGGAGAATGGA
134319 ACTTCATA
131 ACTTCATA
**
134327 CCCAAAATATATCTCATTATACCCAAAAACTTATATGCACCATCCCCAATTCGATTTTTGGTATA
1 CCCAAAATATATCTCATTATACCCAAAAACTTATATGCACCATCCCCAACCCGATTTTTGGTATA
134392 AAGCTTATTCATATATACCCAAAACCAACTTTAAACATGATTTTCTCCCCAAAGTGGAGAATGG
66 AAGCTTATTCATATATACCCAAAACCAACTTTAAACATGATTTTCTCCCCAAAGTGGAGAATGG
134456 GATATCCCCA
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
138 122 1.00
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (138 bp):
CCCAAAATATATCTCATTATACCCAAAAACTTATATGCACCATCCCCAACCCGATTTTTGGTATA
AAGCTTATTCATATATACCCAAAACCAACTTTAAACATGATTTTCTCCCCAAAGTGGAGAATGGA
ACTTCATA
Found at i:135764 original size:24 final size:24
Alignment explanation
Indices: 135737--135783 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
135727 TGAAAGCGAG
*
135737 AAAAGATTTAAGGATTTGATAAGC
1 AAAAGATTTAAGGATTTCATAAGC
*
135761 AAAAGATTTAGGGATTTCATAAG
1 AAAAGATTTAAGGATTTCATAAG
135784 TCATAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.45, C:0.04, G:0.21, T:0.30
Consensus pattern (24 bp):
AAAAGATTTAAGGATTTCATAAGC
Found at i:136498 original size:11 final size:11
Alignment explanation
Indices: 136482--136511 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
136472 TTTATATAAA
136482 ATACAATATAT
1 ATACAATATAT
136493 ATACAATATAT
1 ATACAATATAT
136504 ATACAATA
1 ATACAATA
136512 CAATATATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (11 bp):
ATACAATATAT
Found at i:137786 original size:222 final size:218
Alignment explanation
Indices: 137149--137798 Score: 913
Period size: 219 Copynumber: 3.0 Consensus size: 218
137139 AGCAAACTAC
*
137149 TATTAGATGGCACTAAATTCATATAGAC-GGGTTTATTCAATTAATTA-GAATG-AAAATATGGA
1 TATTAGATGGCACTAAATTCATATAGACGGGGTTTATTCAATTAATTATG-ATGAAAAATATAGA
* * *
137211 TTAATACACGTTCGAAGACAATTTTGGGTATAT------ATGTCAATCTCTAAAGAATTTGGGGA
65 TTAA-ATACGTTTGAAGCCAATTTTGGGTATATAAAAAAATGTCAATCTCTAAAGAATTTGGGGA
* * ***
137270 TGGTGCATATGATTATTTGGGGATGATGATAAATGATTTGGGTATAAAGTATATCAGAGTGGGGA
129 TGGTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGTATAAAGTATATAACTTTGGGGA
137335 TACTGAATTTTGCATTTTGTTTAAT
194 TACTGAATTTTGCATTTTGTTTAAT
*
137360 TATTAGATGGCACTAAATTCATATAGACGGGATTTATTCAATTAATTATGATGAAAAATATAGAT
1 TATTAGATGGCACTAAATTCATATAGACGGGGTTTATTCAATTAATTATGATGAAAAATATAGAT
* * * **
137425 TAAATCACGTTTGAAGCCAATTTTGGATACATAAAAAAATGCCAATCTCCCAAGAATTTGGGGAT
66 TAAAT-ACGTTTGAAGCCAATTTTGGGTATATAAAAAAATGTCAATCTCTAAAGAATTTGGGGAT
* * *
137490 GGTGCATATGATTATTTGGAGATGATGAGAAATGATTTGGGTATACAGTATGTAACTTTGGGGAT
130 GGTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGTATAAAGTATATAACTTTGGGGAT
*
137555 ACTGAATTTTGCAATTTGTTTAAT
195 ACTGAATTTTGCATTTTGTTTAAT
* * * *
137579 TATTAGATGACACTAAATTCATATGGACGGGGCTTATTCAATTAATTATGATGAAAAATATTGAT
1 TATTAGATGGCACTAAATTCATATAGACGGGGTTTATTCAATTAATTATGATGAAAAATATAGAT
* *
137644 TAAAGTACTTTTTAAAGCCAATTTTGGGTATATAAGAAAAAATGTCAATCTCTAAAGAATTTGGG
66 TAAA-TAC-GTTTGAAGCCAATTTTGGGTATAT-A-AAAAAATGTCAATCTCTAAAGAATTTGGG
* * * *
137709 GGTGGTGCATATCATTCTTTGGGGATGATGAGAAATGATTTGGGTATAAAGTATATTACTTTGGG
127 GATGGTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGTATAAAGTATATAACTTTGGG
137774 GATACTGAATTTTGCATTTTGTTTA
192 GATACTGAATTTTGCATTTTGTTTA
137799 TGACACGTTT
Statistics
Matches: 386, Mismatches: 39, Indels: 17
0.87 0.09 0.04
Matches are distributed among these distances:
211 28 0.07
212 22 0.06
213 36 0.09
219 170 0.44
220 21 0.05
221 1 0.00
222 108 0.28
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.36
Consensus pattern (218 bp):
TATTAGATGGCACTAAATTCATATAGACGGGGTTTATTCAATTAATTATGATGAAAAATATAGAT
TAAATACGTTTGAAGCCAATTTTGGGTATATAAAAAAATGTCAATCTCTAAAGAATTTGGGGATG
GTGCATATGATTATTTGGGGATGATGAGAAATGATTTGGGTATAAAGTATATAACTTTGGGGATA
CTGAATTTTGCATTTTGTTTAAT
Found at i:139095 original size:2 final size:2
Alignment explanation
Indices: 139082--139131 Score: 61
Period size: 2 Copynumber: 26.5 Consensus size: 2
139072 ACGAAGGGAC
* *
139082 TA TA TA TT TA TA TA TA TA -A TA TA TA -A TA TA GA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
139121 TA TA TA TA TA T
1 TA TA TA TA TA T
139132 GATTATATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
1 3 0.07
2 38 0.93
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:139247 original size:3 final size:3
Alignment explanation
Indices: 139239--139269 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
139229 GAGAACAAAA
*
139239 AGT AGT AGT AGT AGT AGT AGC AGT AGT AGT A
1 AGT AGT AGT AGT AGT AGT AGT AGT AGT AGT A
139270 ATTAATTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.03, G:0.32, T:0.29
Consensus pattern (3 bp):
AGT
Found at i:140119 original size:3 final size:3
Alignment explanation
Indices: 140113--140159 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
140103 ATATGATGAA
140113 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
140160 ATATATATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Done.