Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015247.1 Corchorus capsularis cultivar CVL-1 contig15268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89983

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
828--892
18
3.3
18
67
29
51
21
46
24
7
1.77
809--892
42
2.0
42
85
0
114
25
44
23
7
1.79
4929--4968
12
3.3
12
89
0
62
10
32
27
30
1.89
5161--5243
22
3.8
22
80
0
103
25
31
20
22
1.98
7992--8035
18
2.5
17
82
10
52
27
0
13
59
1.35
8352--8376
3
8.3
3
100
0
50
68
0
32
0
0.90
12924--12974
22
2.3
23
82
3
59
33
13
15
37
1.87
12971--13012
22
1.9
22
85
0
57
35
16
14
33
1.89
24326--24366
20
2.0
21
85
4
57
17
7
0
75
1.02
24922--24952
15
2.0
16
93
6
55
32
25
0
41
1.56
24960--25004
23
2.0
23
90
0
72
31
11
31
26
1.91
32725--32775
26
2.0
26
88
3
77
19
11
17
50
1.76
36871--37030
81
2.0
81
96
0
293
28
11
19
40
1.87
38140--38206
33
2.0
33
91
0
107
25
38
25
10
1.87
38127--38218
33
3.0
31
77
14
100
23
39
27
9
1.86
43881--43933
22
2.4
22
84
6
63
7
9
5
77
1.12
45406--45472
34
2.0
34
96
0
125
23
28
11
35
1.91
45651--45677
2
13.5
2
100
0
54
48
0
0
51
1.00
48520--48564
21
2.1
21
84
8
56
26
24
0
48
1.51
53488--53603
33
3.6
33
90
3
175
41
19
7
31
1.80
53488--53626
66
2.2
63
80
6
154
42
20
7
28
1.80
56237--56275
12
3.3
12
85
3
53
10
30
28
30
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58266--58329
33
1.9
33
87
0
92
21
9
25
43
1.82
65865--65904
19
2.2
18
86
4
53
30
20
5
45
1.72
74815--74983
42
4.0
41
75
14
148
25
25
3
45
1.69
74868--74916
25
2.0
25
88
8
73
28
22
0
48
1.50
74979--75078
14
7.3
13
72
17
78
20
19
6
55
1.64
75048--75094
21
2.2
21
85
7
60
21
19
6
53
1.67
75323--75409
32
2.7
32
90
3
129
20
17
4
57
1.57
75487--75651
38
4.3
38
94
0
285
26
15
6
51
1.67
76285--76331
24
2.0
23
84
12
60
31
10
6
51
1.62
80377--80417
15
2.7
16
85
11
59
4
14
0
80
0.87
80377--80454
7
10.3
7
72
16
50
7
15
0
76
0.99
80377--80448
14
5.3
14
80
11
69
6
15
0
77
0.96
80398--80461
25
2.5
24
85
7
83
7
15
0
76
1.00
81646--81683
20
1.9
20
94
0
67
15
31
18
34
1.92
82071--82177
51
2.0
54
85
5
148
53
5
6
34
1.50
83780--83813
17
1.9
18
88
5
52
17
0
0
82
0.67
88605--88652
24
2.0
24
100
0
96
37
20
16
25
1.93

Tables:   1

The End!