Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015252.1 Corchorus capsularis cultivar CVL-1 contig15273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16476

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
394--427
10
3.4
10
83
0
50
11
2
5
79
1.02
3203--3263
21
3.0
21
78
2
70
34
19
9
36
1.85
7733--7837
33
3.2
33
83
2
140
25
9
19
45
1.80
7827--7938
33
3.4
33
85
2
100
31
9
18
40
1.83
8316--8374
30
2.0
30
90
6
93
30
16
30
22
1.96
8414--8794
192
2.0
192
98
0
735
28
22
18
30
1.97
10706--10744
2
19.5
2
94
0
69
2
0
46
51
1.14
10825--10900
38
2.0
38
92
5
127
43
22
7
26
1.80
12465--12712
50
4.9
50
94
2
442
27
36
19
16
1.93
12465--12718
76
3.3
75
93
4
438
26
36
19
16
1.94
12465--12718
26
10.0
26
91
5
430
26
36
19
16
1.94
13610--13685
32
2.4
32
84
0
98
26
14
34
25
1.94
13851--13882
16
2.0
16
93
0
55
31
40
18
9
1.83
13983--14534
50
11.2
50
81
8
557
32
18
26
22
1.97
13983--14491
242
2.1
248
87
4
728
33
18
26
22
1.97
14513--14561
19
2.6
19
86
0
71
42
14
28
14
1.84
14700--14729
15
2.0
15
93
0
51
26
23
26
23
2.00
14740--14779
20
2.0
20
85
0
53
35
25
22
17
1.95
14661--14790
42
2.9
46
77
13
144
30
28
25
16
1.96

Tables:   1

The End!