Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015261.1 Corchorus capsularis cultivar CVL-1 contig15282, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2195
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30


Found at i:1073 original size:6 final size:6

Alignment explanation


    Indices: 1064--1093  Score: 60
    Period size: 6  Copynumber: 5.0  Consensus size: 6

       1054 CCTAAAAACA

                                              
       1064 AAAATT AAAATT AAAATT AAAATT AAAATT
          1 AAAATT AAAATT AAAATT AAAATT AAAATT

       1094 GGGTTGCCTC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (6 bp):   
AAAATT

Done.