Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015264.1 Corchorus capsularis cultivar CVL-1 contig15285, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20674

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2448--2500
10
5.0
10
76
13
52
5
18
47
28
1.72
7498--7555
14
4.1
14
77
4
62
13
25
1
58
1.45
7481--7535
15
3.7
15
73
9
58
14
27
3
54
1.57
7484--7549
29
2.2
30
86
2
89
15
27
3
54
1.55
7598--7659
14
4.9
13
70
20
51
16
22
1
59
1.45
7504--7670
36
4.7
36
80
8
191
16
23
4
55
1.58
7605--7645
22
1.9
21
85
5
55
17
24
2
56
1.53
7829--7946
37
3.2
37
70
9
116
27
20
7
44
1.79
7779--8012
72
3.3
71
89
3
344
27
17
7
47
1.75
7943--8069
55
2.3
55
93
1
209
29
15
8
46
1.76
10969--11003
3
11.7
3
100
0
70
34
0
0
65
0.93
11107--11148
19
2.3
18
80
12
50
59
14
16
9
1.60
15619--15798
89
2.0
89
100
0
360
36
22
6
33
1.81
17199--17575
49
7.8
48
76
5
269
32
15
27
23
1.95
17280--17578
97
3.1
96
76
6
298
33
15
28
23
1.95
18207--18258
26
2.0
26
84
3
68
57
11
7
23
1.59
20534--20575
21
2.0
21
90
0
66
21
11
26
40
1.88

Tables:   1

The End!