Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015267.1 Corchorus capsularis cultivar CVL-1 contig15288, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37


Found at i:470 original size:16 final size:16

Alignment explanation


    Indices: 449--482  Score: 68
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        439 TCTGAAATAT

                            
        449 TTCAGAGCTTTTCTGC
          1 TTCAGAGCTTTTCTGC

                            
        465 TTCAGAGCTTTTCTGC
          1 TTCAGAGCTTTTCTGC

              
        481 TT
          1 TT

        483 TCTGAATTGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   18  1.00

ACGTcount: A:0.12, C:0.24, G:0.18, T:0.47


Consensus pattern (16 bp):   
TTCAGAGCTTTTCTGC
Done.