Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015268.1 Corchorus capsularis cultivar CVL-1 contig15289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12624

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
531--581
21
2.4
21
84
12
68
33
5
7
52
1.54
549--632
26
3.2
27
65
27
72
27
7
8
57
1.54
545--647
51
2.1
49
94
3
179
25
6
7
60
1.49
717--753
2
18.5
2
100
0
74
48
0
0
51
1.00
1289--1637
187
1.9
189
91
2
578
35
10
18
35
1.85
5489--5513
13
1.9
13
100
0
50
28
16
16
40
1.89
6806--6835
2
15.5
2
93
6
53
50
0
0
50
1.00
7196--7233
2
18.5
2
94
5
67
50
2
0
47
1.15
7263--7327
31
2.1
30
94
2
112
23
20
7
49
1.74
8469--8565
22
4.5
22
74
14
85
36
13
17
32
1.89
8464--8591
22
5.7
23
70
18
76
35
12
17
34
1.87
8920--9273
22
16.0
22
69
10
132
39
9
14
35
1.80
9343--9799
22
21.0
22
66
18
147
37
9
16
36
1.81
9541--9620
23
3.5
23
89
1
108
37
6
16
40
1.74
9540--9664
45
2.8
42
77
9
106
36
8
16
38
1.79
9812--9860
22
2.2
22
85
0
62
53
10
14
22
1.71
9900--9969
22
3.2
22
85
4
88
47
5
12
34
1.66
10079--10111
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!