Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015269.1 Corchorus capsularis cultivar CVL-1 contig15290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37926

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
51
0
0
48
1.00
507--548
19
2.2
20
91
4
68
26
4
19
50
1.67
2497--2543
3
15.7
3
100
0
94
65
0
0
34
0.93
5275--5303
3
9.7
3
100
0
58
34
0
0
65
0.93
6439--6499
32
1.9
31
83
9
79
39
32
9
18
1.83
7087--7317
119
1.9
119
88
6
349
51
4
9
35
1.54
7101--7343
119
2.0
117
81
9
278
53
4
8
34
1.51
7176--7463
149
1.9
147
90
3
461
53
2
7
35
1.45
7352--7404
23
2.3
23
83
6
63
47
1
11
39
1.50
8242--8286
23
1.9
24
86
4
65
48
2
13
35
1.54
8372--8415
4
10.8
4
97
2
79
50
0
22
27
1.50
15161--15191
15
2.1
15
93
0
53
29
12
6
51
1.65
20057--20314
128
2.0
128
100
0
516
24
15
18
41
1.89
20594--20656
26
2.4
26
100
0
126
52
14
7
25
1.68
20729--20758
15
2.0
15
93
0
51
83
0
0
16
0.65
22408--22563
35
4.4
35
70
15
106
24
18
3
53
1.61
22408--22467
21
2.8
21
76
18
61
25
18
6
50
1.71
22532--22598
14
4.4
14
69
20
53
19
19
5
55
1.63
22476--22593
34
3.4
34
78
6
112
22
18
4
55
1.60
22576--22696
7
16.7
7
67
14
50
19
18
3
58
1.52
22576--22872
22
13.8
22
73
12
197
21
18
4
55
1.60
22568--22689
15
8.4
14
70
14
61
19
18
4
58
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22741--22782
8
5.4
8
77
5
50
16
21
2
59
1.48
22779--22816
20
1.9
20
89
10
60
21
18
5
55
1.62
22884--22983
30
3.0
31
83
11
103
23
17
8
52
1.70
22884--22983
36
3.0
33
82
8
116
23
17
8
52
1.70
26729--26803
27
2.8
27
85
0
87
46
25
12
16
1.81
31200--31239
12
3.3
12
89
0
62
32
27
27
12
1.93
31215--31297
42
2.0
42
81
9
98
26
38
27
7
1.82

Tables:   1

The End!