Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001527.1 Corchorus capsularis cultivar CVL-1 contig01527, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5418
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33


Found at i:731 original size:17 final size:17

Alignment explanation


    Indices: 709--741  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        699 CAGTCAAGTC

                             
        709 TTTTTTGTTTTTGTTTT
          1 TTTTTTGTTTTTGTTTT

                  *         
        726 TTTTTTTTTTTTGTTT
          1 TTTTTTGTTTTTGTTT

        742 CCTTAACACT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91


Consensus pattern (17 bp):   
TTTTTTGTTTTTGTTTT

Found at i:2199 original size:19 final size:19

Alignment explanation


    Indices: 2175--2214  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2165 ACCTTCTAGG

                               
       2175 AAGGCGTCCTTTCCACTTC
          1 AAGGCGTCCTTTCCACTTC

                               
       2194 AAGGCGTCCTTTCCACTTC
          1 AAGGCGTCCTTTCCACTTC

              
       2213 AA
          1 AA

       2215 AATACCGGTG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.20, C:0.35, G:0.15, T:0.30


Consensus pattern (19 bp):   
AAGGCGTCCTTTCCACTTC
Done.