Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015272.1 Corchorus capsularis cultivar CVL-1 contig15293, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11761

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
174--259
22
4.2
20
77
12
77
44
0
5
50
1.26
214--246
14
2.3
15
89
5
50
42
0
6
51
1.26
6870--6916
22
2.1
22
100
0
94
27
23
31
17
1.96
7086--7127
19
2.3
19
91
4
68
54
0
11
33
1.37
7745--7805
27
2.3
27
100
0
122
14
32
34
18
1.91
8780--8827
21
2.3
21
88
0
69
35
14
4
45
1.64
8762--8963
56
3.6
56
92
0
332
38
16
7
37
1.78
8844--8939
21
4.9
21
74
17
98
40
15
4
39
1.67
10289--10329
12
3.4
12
86
0
64
9
4
7
78
1.10
11057--11107
26
1.9
27
84
4
68
29
15
3
50
1.62
11225--11276
15
3.4
15
71
23
54
25
25
7
42
1.81
11211--11278
31
2.2
30
94
5
118
22
25
5
47
1.73
11242--11365
40
3.3
40
73
17
156
20
25
3
50
1.64
11261--11385
32
3.7
32
75
15
133
20
25
3
50
1.63
11243--11436
72
2.6
72
90
3
280
19
24
5
50
1.69
11447--11510
16
4.1
16
76
8
78
15
23
6
54
1.64
11336--11553
110
2.0
111
83
6
282
15
22
8
53
1.69

Tables:   1

The End!