Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015273.1 Corchorus capsularis cultivar CVL-1 contig15294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31300

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
973--1013
15
2.7
15
96
0
73
43
21
26
7
1.79
2457--2481
12
2.1
12
100
0
50
20
8
16
56
1.65
3992--4023
11
2.8
12
86
13
50
34
0
18
46
1.49
5381--5428
20
2.3
20
78
3
51
18
8
8
64
1.46
9138--9220
33
2.5
33
94
0
139
8
21
45
24
1.79
11461--11702
53
4.7
53
78
10
295
43
10
19
26
1.83
11484--11669
98
1.9
98
93
0
318
44
9
19
25
1.81
11671--11731
31
2.0
31
93
0
104
36
13
16
34
1.87
11621--11786
84
2.0
85
97
1
316
40
10
18
30
1.84
11702--12187
53
9.5
53
83
7
610
45
9
18
26
1.80
11582--12102
151
3.5
142
84
8
586
45
9
18
26
1.80
11520--11884
182
2.0
176
84
9
466
43
10
18
27
1.82
11744--12101
105
3.5
98
87
3
421
46
9
18
25
1.78
11461--11988
288
1.8
288
87
3
794
44
10
18
26
1.82
11702--12187
256
1.9
257
97
0
929
45
9
18
26
1.80
11842--12187
105
3.4
104
87
4
452
46
10
18
25
1.80
13455--13516
30
2.1
30
96
0
115
8
29
40
22
1.82
18947--18975
11
2.5
12
94
5
51
13
0
0
86
0.58
22758--22838
33
2.5
33
85
0
108
9
19
46
23
1.80

Tables:   1

The End!