Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015274.1 Corchorus capsularis cultivar CVL-1 contig15295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7546
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:5961 original size:10 final size:10

Alignment explanation


    Indices: 5946--5981  Score: 63
    Period size: 10  Copynumber: 3.6  Consensus size: 10

       5936 AGTTATATTG

                      
       5946 AAAAATAAAA
          1 AAAAATAAAA

                  *   
       5956 AAAAATCAAA
          1 AAAAATAAAA

                      
       5966 AAAAATAAAA
          1 AAAAATAAAA

                  
       5976 AAAAAT
          1 AAAAAT

       5982 TTCGACCAGG


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  10   24  1.00

ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11


Consensus pattern (10 bp):   
AAAAATAAAA

Done.