Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015288.1 Corchorus capsularis cultivar CVL-1 contig15309, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4360
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38


Found at i:3517 original size:2 final size:2

Alignment explanation


    Indices: 3498--3535  Score: 58
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       3488 AAATATAATG

                      *        *                                    
       3498 TA TA TA TC TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       3536 GGCAAATTAT


Statistics
Matches: 32,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.