Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015289.1 Corchorus capsularis cultivar CVL-1 contig15310, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72560

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
888--987
31
3.3
29
74
5
101
27
21
16
36
1.94
2293--2354
29
2.1
29
87
0
88
32
9
22
35
1.87
5311--5368
25
2.3
25
76
8
64
50
8
10
31
1.67
5973--6072
52
2.0
52
90
5
161
30
4
8
58
1.45
7716--7754
21
1.9
20
84
5
51
56
12
0
30
1.37
8122--8149
13
2.2
13
100
0
56
35
14
14
35
1.86
8435--8499
33
2.0
33
93
6
114
18
38
27
15
1.91
8548--8632
33
2.6
31
78
9
89
12
37
42
7
1.71
8700--8783
42
2.0
42
95
0
150
32
20
10
36
1.87
9092--9253
81
2.0
81
93
0
279
18
25
23
32
1.97
9981--10263
149
1.9
150
87
2
417
24
11
30
33
1.91
17503--17527
3
8.3
3
100
0
50
32
0
0
68
0.90
18396--18421
12
2.2
12
100
0
52
42
15
0
42
1.47
29241--29319
40
2.0
40
85
7
108
10
20
16
53
1.71
36776--36813
18
2.1
18
100
0
76
26
15
18
39
1.91
56919--56959
4
10.2
4
89
0
55
0
17
4
78
0.93
59202--59252
2
25.5
2
83
0
66
50
0
7
41
1.31
59200--59256
6
9.8
6
88
7
73
50
0
10
38
1.37
61681--61708
2
14.0
2
100
0
56
50
0
50
0
1.00
67467--67575
50
2.2
50
98
1
211
51
16
3
28
1.61
68975--69003
2
14.5
2
100
0
58
51
0
48
0
1.00

Tables:   1

The End!