Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015290.1 Corchorus capsularis cultivar CVL-1 contig15311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88358
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:2099 original size:21 final size:24
Alignment explanation
Indices: 2053--2101 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 24
2043 CCAAAAAAAA
*
2053 AAAATGATGCAAATGTATATACAC
1 AAAATGATGCAAATGTATACACAC
2077 AAAAT-ATG-AAATGTA-ACACAC
1 AAAATGATGCAAATGTATACACAC
2098 AAAA
1 AAAA
2102 GACGCATAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 9 0.38
22 7 0.29
23 3 0.12
24 5 0.21
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.20
Consensus pattern (24 bp):
AAAATGATGCAAATGTATACACAC
Found at i:11695 original size:2 final size:2
Alignment explanation
Indices: 11644--11684 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
11634 CTGCCCCATA
11644 CT CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
11685 TTTTCCTCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:11706 original size:17 final size:17
Alignment explanation
Indices: 11655--11695 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
11645 TCTCTTCTCT
* *
11655 CTCTCTCTCTCTCTCTC
1 CTCTCTCTCTCTTTTTC
11672 TCTCTCTCTCTCTTTTTC
1 -CTCTCTCTCTCTTTTTC
11690 CTCTCT
1 CTCTCT
11696 TTCTTTCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (17 bp):
CTCTCTCTCTCTTTTTC
Found at i:13929 original size:15 final size:16
Alignment explanation
Indices: 13904--13938 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
13894 TAAAGATAGC
13904 TTTTCATTTTTTTTTT
1 TTTTCATTTTTTTTTT
13920 TTTTCATTTTTTTTTT
1 TTTTCATTTTTTTTTT
13936 TTT
1 TTT
13939 AAGGAAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.06, C:0.06, G:0.00, T:0.89
Consensus pattern (16 bp):
TTTTCATTTTTTTTTT
Found at i:18064 original size:31 final size:31
Alignment explanation
Indices: 18010--18118 Score: 139
Period size: 31 Copynumber: 3.5 Consensus size: 31
18000 ACGGGGTCCG
* * * *
18010 ACGTGGCATGTCACGTGTTCCAAAAAGTGAC
1 ACGTGGCACGCCACATGTACCAAAAAGTGAC
*
18041 ATGTGGCACGCCACATGTACCAAAAAGTGAC
1 ACGTGGCACGCCACATGTACCAAAAAGTGAC
* *
18072 ACGTGTCACGCCACGTGTA-CAAAAAGTGAC
1 ACGTGGCACGCCACATGTACCAAAAAGTGAC
*
18102 ACGTGGCACACCACATG
1 ACGTGGCACGCCACATG
18119 ACATGCCACA
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
30 25 0.37
31 42 0.63
ACGTcount: A:0.32, C:0.27, G:0.24, T:0.17
Consensus pattern (31 bp):
ACGTGGCACGCCACATGTACCAAAAAGTGAC
Found at i:18628 original size:20 final size:20
Alignment explanation
Indices: 18603--18645 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
18593 TTAGGGTTTA
*
18603 ACTCAAAACTTTGTGTTTTG
1 ACTCAAAACTTTGGGTTTTG
18623 ACTCAAAACTTTGGGTTTTG
1 ACTCAAAACTTTGGGTTTTG
18643 ACT
1 ACT
18646 TTGGGGATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (20 bp):
ACTCAAAACTTTGGGTTTTG
Found at i:18779 original size:218 final size:213
Alignment explanation
Indices: 18399--18997 Score: 856
Period size: 218 Copynumber: 2.9 Consensus size: 213
18389 TCATATTTAG
18399 GGTTTGACTCAAAACTTTGGGCTTTGACTTTGGGGATTGACTATCAAACGTTGGCTTTATTATTA
1 GGTTTGACTCAAAACTTTGGG-TTTGACTTTGGGGATTGACTATCAAACGTTGGCTTTATTATTA
*
18464 TCATGATGGGAGGTTTTTAATATCATAATACGGAAACAAGTATTTTGTACGTTTAATTAATTGAA
65 TCATGATGGGAGGTTTTTAATATCATAATACGGAAACAAGTATTTTGTACGTATAATTAATTGAA
*
18529 GTTTTGAGGACATACCATCAAAGTTTGGGGATTGACAATTAAATTTGGGGTTTCAATATCATATT
130 GTTTTGAGGACTTACCATCAAAGTTTGGGGATTGACAATTAAATTTGGGGTTTCAATATCATATT
18594 TAGGGTTTAACTCAAAACTTT
195 TAGGG-TTAACTCAAAA-TTT
*
18615 GTGTTTTGACTCAAAACTTTGGGTTTTGACTTTGGGGATTGACTATCAAACGTTGACTTTATTAT
1 G-G-TTTGACTCAAAACTTTGGG-TTTGACTTTGGGGATTGACTATCAAACGTTGGCTTTATTAT
* *
18680 TATCATGATAGGAGGTTTTTAATATCATAATACGGAAACAAGTATTTTGTACCTATAATTAATTG
63 TATCATGATGGGAGGTTTTTAATATCATAATACGGAAACAAGTATTTTGTACGTATAATTAATTG
*
18745 AAGTTTTGAGGACTTACCGTCAAAGTTTGGGGATTGACAATTAAATTTGGGG-TTCAATATCATA
128 AAGTTTTGAGGACTTACCATCAAAGTTTGGGGATTGACAATTAAATTTGGGGTTTCAATATCATA
*
18809 TTTAGGGTTGACTCAAAATTT
193 TTTAGGGTTAACTCAAAATTT
*
18830 GG---G--------C------TTTGACTTTGGGGATTGACTATCAAACATTGGCTTTATTATTAT
1 GGTTTGACTCAAAACTTTGGGTTTGACTTTGGGGATTGACTATCAAACGTTGGCTTTATTATTAT
* * **
18878 CATGATGGGAGGTTTTTAATATCATAATACGGAAACAAGTCTTATGTTTGTATAATTAATTGAAG
66 CATGATGGGAGGTTTTTAATATCATAATACGGAAACAAGTATTTTGTACGTATAATTAATTGAAG
* * * * *
18943 TTTTGGGGACTTACCATCAAATTTTGGGGTTTGACTATTAAATTTTGGAGTTTCA
131 TTTTGAGGACTTACCATCAAAGTTTGGGGATTGACAATTAAA-TTTGGGGTTTCA
18998 CTATAAAATT
Statistics
Matches: 357, Mismatches: 22, Indels: 27
0.88 0.05 0.07
Matches are distributed among these distances:
195 138 0.39
196 6 0.02
197 4 0.01
202 1 0.00
210 1 0.00
214 1 0.00
215 4 0.01
216 11 0.03
217 20 0.06
218 171 0.48
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.39
Consensus pattern (213 bp):
GGTTTGACTCAAAACTTTGGGTTTGACTTTGGGGATTGACTATCAAACGTTGGCTTTATTATTAT
CATGATGGGAGGTTTTTAATATCATAATACGGAAACAAGTATTTTGTACGTATAATTAATTGAAG
TTTTGAGGACTTACCATCAAAGTTTGGGGATTGACAATTAAATTTGGGGTTTCAATATCATATTT
AGGGTTAACTCAAAATTT
Found at i:18971 original size:195 final size:196
Alignment explanation
Indices: 18620--19039 Score: 608
Period size: 195 Copynumber: 2.1 Consensus size: 196
18610 ACTTTGTGTT
* *
18620 TTGACTCAAAACTTTGGGTTTTGACTTTGGGGATTGACTATCAAACGTTGACTTTATTATTATCA
1 TTGACTCAAAACTTTGGGCTTTGACTTTGGGGATTGACTATCAAACATTGACTTTATTATTATCA
*
18685 TGATAGGAGGTTTTTAATATCATAATACGGAAACAAGTATTTTGTACCTATAATTAATTGAAGTT
66 TGATAGGAGGTTTTTAATATCATAATACGGAAACAAGTATTATGTACCTATAATTAATTGAAGTT
*
18750 TTGAGGACTTACCGTCAAAGTTTGGGGATTGACAATTAAATTTGGGGTTCAATATCATATTTAGG
131 TTGAGGACTTACCATCAAAGTTTGGGGATTGACAATTAAATTTGGGGTTCAATATCATATTTAGG
18815 G
196 G
*
18816 TTGACTCAAAA-TTTGGGCTTTGACTTTGGGGATTGACTATCAAACATTGGCTTTATTATTATCA
1 TTGACTCAAAACTTTGGGCTTTGACTTTGGGGATTGACTATCAAACATTGACTTTATTATTATCA
* * ***
18880 TGATGGGAGGTTTTTAATATCATAATACGGAAACAAGTCTTATGTTTGTATAATTAATTGAAGTT
66 TGATAGGAGGTTTTTAATATCATAATACGGAAACAAGTATTATGTACCTATAATTAATTGAAGTT
* * * * * * * *
18945 TTGGGGACTTACCATCAAATTTTGGGGTTTGACTATTAAATTTTGGAGTTTCACTATAAAATTTT
131 TTGAGGACTTACCATCAAAGTTTGGGGATTGACAATTAAA-TTTGG-GGTTCAATATCATA-TTT
* *
19010 CGAG
193 AGGG
* *
19014 TTCACTCAAAACTTTGGGGTTTGACT
1 TTGACTCAAAACTTTGGGCTTTGACT
19040 ATAGAACGTT
Statistics
Matches: 198, Mismatches: 22, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
195 144 0.73
196 16 0.08
197 10 0.05
198 15 0.08
199 13 0.07
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (196 bp):
TTGACTCAAAACTTTGGGCTTTGACTTTGGGGATTGACTATCAAACATTGACTTTATTATTATCA
TGATAGGAGGTTTTTAATATCATAATACGGAAACAAGTATTATGTACCTATAATTAATTGAAGTT
TTGAGGACTTACCATCAAAGTTTGGGGATTGACAATTAAATTTGGGGTTCAATATCATATTTAGG
G
Found at i:18985 original size:21 final size:21
Alignment explanation
Indices: 18961--19042 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
18951 ACTTACCATC
* * *
18961 AAATTTTGGGGTTTGACTATT
1 AAATTTTGGAGTTTCACTATA
18982 AAATTTTGGAGTTTCACTATA
1 AAATTTTGGAGTTTCACTATA
* *
19003 AAATTTTCGAG-TTCACT-CA
1 AAATTTTGGAGTTTCACTATA
* * *
19022 AAACTTTGGGGTTTGACTATA
1 AAATTTTGGAGTTTCACTATA
19043 GAACGTTGGG
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
19 9 0.18
20 11 0.22
21 29 0.59
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.41
Consensus pattern (21 bp):
AAATTTTGGAGTTTCACTATA
Found at i:19147 original size:21 final size:21
Alignment explanation
Indices: 19086--19154 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
19076 TTGATCATCG
*
19086 AACTTTGGGAAAT-AACTATCA
1 AACTTTGGG-AATCGACTATCA
* *
19107 AACTTTGGGAATGGAATATCA
1 AACTTTGGGAATCGACTATCA
*
19128 AACTTTGGTG-CTCGACTATCA
1 AACTTTGG-GAATCGACTATCA
19149 AACTTT
1 AACTTT
19155 TCGATCAACT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
20 3 0.07
21 37 0.90
22 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (21 bp):
AACTTTGGGAATCGACTATCA
Found at i:20615 original size:12 final size:12
Alignment explanation
Indices: 20598--20622 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20588 CATTTTCTAT
20598 TCTCTAGAAAAC
1 TCTCTAGAAAAC
20610 TCTCTAGAAAAC
1 TCTCTAGAAAAC
20622 T
1 T
20623 TGTTTAGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (12 bp):
TCTCTAGAAAAC
Found at i:28058 original size:20 final size:20
Alignment explanation
Indices: 28018--28076 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
28008 TTACAAAGAA
*
28018 AACTCACAATTCCGTGCGAGT
1 AACTCAC-ATTCCGTGAGAGT
*
28039 AACTCACATTCTGTGAGAGT
1 AACTCACATTCCGTGAGAGT
*
28059 AACTCATATTCCGTGAGA
1 AACTCACATTCCGTGAGA
28077 CTAGAATCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 27 0.79
21 7 0.21
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (20 bp):
AACTCACATTCCGTGAGAGT
Found at i:28523 original size:198 final size:198
Alignment explanation
Indices: 28181--28810 Score: 714
Period size: 198 Copynumber: 3.1 Consensus size: 198
28171 TTTAAGAGTT
* * * * * *
28181 TTATACAATCCACTGTCAGTGTAAATTTTGGACTTCATAAGTGGGTTAAGAAGTTGACACATAGC
1 TTATACAATACACTGTCAATGTAAATTTTGAACTTCATAAGCGGGTTAAGAAGTTGACATATACC
* * * * *
28246 CCATTTCTTAAGTAATAAAATATTTAATATTAATGCATATTCCTTAAGTGGACACATGTCAA-CC
66 CCATTTCATAATTAATTAAATATTTAATATTAATACATATTCCCTAAGT-GACACATGTCAACCC
* * *** * * *
28310 TTAAA-CCTCGCACGTGTAGTCTGC-AAAACTCCACTGGTGGTGTCTTGTATAATTGTTCTTATA
130 TTAAACCCT-GCACGTGCAGTATGCTAAAA-TCCACTGACAGTGTATAGAATAATTGTTCTTATA
28373 GGATTA
193 GGATTA
* * *
28379 TTATACAATACATTGCCAATGTAAATTTTGAACTTCATAAGCAGGTTAAGAAGTTGACATATACC
1 TTATACAATACACTGTCAATGTAAATTTTGAACTTCATAAGCGGGTTAAGAAGTTGACATATACC
28444 CCATTTCATAATTAATTAAATATTTAATATTAATACATATTCCCTAAGTGACACATGTCAACCCT
66 CCATTTCATAATTAATTAAATATTTAATATTAATACATATTCCCTAAGTGACACATGTCAACCCT
* * *
28509 TAAACCCTGCACGTGCAGTATGCTAAAATCCACTGACATTGTATAGAATATTTTTTCTTATAGGA
131 TAAACCCTGCACGTGCAGTATGCTAAAATCCACTGACAGTGTATAGAATAATTGTTCTTATAGGA
28574 TTA
196 TTA
* *
28577 TTAT---ATACACTGTCAATGTAAATTTTGAACTCCATAAGCGGGTTAAGAAGTTGACATATATC
1 TTATACAATACACTGTCAATGTAAATTTTGAACTTCATAAGCGGGTTAAGAAGTTGACATATACC
* * * * *
28639 TCATTTCATTATTAATTAAATATATAATATTAATACATATTCCCTAAGGGGACACATGTCAACCT
66 CCATTTCATAATTAATTAAATATTTAATATTAATACATATTCCCTAA-GTGACACATGTCAACCC
* * * * * * * *
28704 TTAAACCCTACACGTTCAATTTGTTAAACTCCACTGACGATGTATGTATAGTATAATTTTTCTTT
130 TTAAACCCTGCACGTGCAGTATGCTAAAATCCACTGAC-A-G--TGTATAGAATAA----T-TGT
*
28769 TCTTATAAGATTA
186 TCTTATAGGATTA
*
28782 TTATACAATACACTGTCAGTGTATAATTT
1 TTATACAATACACTGTCAATGTA-AATTT
28811 GGATCATTTG
Statistics
Matches: 369, Mismatches: 46, Indels: 23
0.84 0.11 0.05
Matches are distributed among these distances:
195 97 0.26
196 47 0.13
197 13 0.04
198 155 0.42
199 7 0.02
200 10 0.03
204 1 0.00
205 19 0.05
208 15 0.04
209 5 0.01
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (198 bp):
TTATACAATACACTGTCAATGTAAATTTTGAACTTCATAAGCGGGTTAAGAAGTTGACATATACC
CCATTTCATAATTAATTAAATATTTAATATTAATACATATTCCCTAAGTGACACATGTCAACCCT
TAAACCCTGCACGTGCAGTATGCTAAAATCCACTGACAGTGTATAGAATAATTGTTCTTATAGGA
TTA
Found at i:35152 original size:11 final size:11
Alignment explanation
Indices: 35136--35167 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
35126 AAAGTTCGTG
35136 TTTGAAGATTA
1 TTTGAAGATTA
*
35147 TTTGAAGATAA
1 TTTGAAGATTA
35158 TTTGAAGATT
1 TTTGAAGATT
35168 TGAAGACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (11 bp):
TTTGAAGATTA
Found at i:35161 original size:22 final size:22
Alignment explanation
Indices: 35136--35195 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
35126 AAAGTTCGTG
*
35136 TTTGAAGATTATTTGAAGATAA
1 TTTGAAGATTATTTGAAGACAA
35158 TTTGAAG---ATTTGAAGACAA
1 TTTGAAGATTATTTGAAGACAA
*
35177 -TTGAAGAATTATTTCAAGA
1 TTTGAAG-ATTATTTGAAGA
35196 AGCAAGAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
18 6 0.19
19 11 0.34
22 15 0.47
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.37
Consensus pattern (22 bp):
TTTGAAGATTATTTGAAGACAA
Found at i:35170 original size:19 final size:18
Alignment explanation
Indices: 35146--35183 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
35136 TTTGAAGATT
*
35146 ATTTGAAGATAATTTGAAG
1 ATTTGAAGACAA-TTGAAG
35165 ATTTGAAGACAATTGAAG
1 ATTTGAAGACAATTGAAG
35183 A
1 A
35184 ATTATTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.32
Consensus pattern (18 bp):
ATTTGAAGACAATTGAAG
Found at i:36540 original size:6 final size:6
Alignment explanation
Indices: 36529--36559 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
36519 ATAATTGCTA
36529 TAGATT TAGATT TAGATT TAGATT TA-ATT TA
1 TAGATT TAGATT TAGATT TAGATT TAGATT TA
36560 CTTTGCTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.35, C:0.00, G:0.13, T:0.52
Consensus pattern (6 bp):
TAGATT
Found at i:38242 original size:21 final size:21
Alignment explanation
Indices: 38217--38259 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
38207 GATGGATTAA
38217 GGGGAGTTTGCATAGGACGAG
1 GGGGAGTTTGCATAGGACGAG
38238 GGGGAGTTTGCATAGGACGAG
1 GGGGAGTTTGCATAGGACGAG
38259 G
1 G
38260 CAAATGCAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.49, T:0.19
Consensus pattern (21 bp):
GGGGAGTTTGCATAGGACGAG
Found at i:41124 original size:12 final size:12
Alignment explanation
Indices: 41104--41142 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
41094 TTGTGGCCAA
* *
41104 TTGCCCCATACG
1 TTGCTCCATGCG
41116 TTGCTCCATGCG
1 TTGCTCCATGCG
*
41128 ATGCTCCATGCG
1 TTGCTCCATGCG
41140 TTG
1 TTG
41143 GCCAGTCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.13, C:0.33, G:0.23, T:0.31
Consensus pattern (12 bp):
TTGCTCCATGCG
Found at i:41568 original size:12 final size:12
Alignment explanation
Indices: 41551--41580 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
41541 CAGGAAGTTT
41551 ATGAGTCGAACC
1 ATGAGTCGAACC
*
41563 ATGAGTCGAATC
1 ATGAGTCGAACC
41575 ATGAGT
1 ATGAGT
41581 ATCATCCACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (12 bp):
ATGAGTCGAACC
Found at i:43624 original size:14 final size:15
Alignment explanation
Indices: 43594--43626 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
43584 AGGTAAGTGC
43594 TATGTATTGGGTTTT
1 TATGTATTGGGTTTT
*
43609 TATGTATT-GTTTTT
1 TATGTATTGGGTTTT
43623 TATG
1 TATG
43627 GGTTTCGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.64
Consensus pattern (15 bp):
TATGTATTGGGTTTT
Found at i:44485 original size:24 final size:24
Alignment explanation
Indices: 44453--44501 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
44443 AGCAAGTTGC
44453 AGATCATGGTCAAGTTGCAGG-TGA
1 AGATCATGGTCAAGTTG-AGGATGA
* *
44477 AGATGATGGTGAAGTTGAGGATGA
1 AGATCATGGTCAAGTTGAGGATGA
44501 A
1 A
44502 ATTAAAAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 19 0.86
ACGTcount: A:0.33, C:0.06, G:0.37, T:0.24
Consensus pattern (24 bp):
AGATCATGGTCAAGTTGAGGATGA
Found at i:45652 original size:72 final size:72
Alignment explanation
Indices: 45549--45685 Score: 222
Period size: 72 Copynumber: 1.9 Consensus size: 72
45539 TTGTATTATC
*
45549 TGTTGTACAAGCAATTGAGAAAACAATCAAGGACATCACTCCAGATACTGAGCACAGGTTTTGTC
1 TGTTGTACAAGCAATTGAGAAAACAATCAAGGACATCACTCCAGATACTGAGCACAGGTTATGTC
45614 CTCGACA
66 CTCGACA
* * *
45621 TGTTGTACAGGCAATTGA-AAAATCAATCAAGGACATCACTCTAGATGCTGAGCACAGGTTATGT
1 TGTTGTACAAGCAATTGAGAAAA-CAATCAAGGACATCACTCCAGATACTGAGCACAGGTTATGT
45685 C
65 C
45686 AATTGGCATG
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
71 4 0.07
72 56 0.93
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (72 bp):
TGTTGTACAAGCAATTGAGAAAACAATCAAGGACATCACTCCAGATACTGAGCACAGGTTATGTC
CTCGACA
Found at i:46775 original size:15 final size:15
Alignment explanation
Indices: 46752--46794 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
46742 GCTGCATCAG
*
46752 CATCAAACCAAGCAA
1 CATCCAACCAAGCAA
**
46767 CATCCAACCAAGCTG
1 CATCCAACCAAGCAA
*
46782 CCTCCAACCAAGC
1 CATCCAACCAAGC
46795 TGCAACCAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.40, C:0.42, G:0.09, T:0.09
Consensus pattern (15 bp):
CATCCAACCAAGCAA
Found at i:46795 original size:15 final size:15
Alignment explanation
Indices: 46769--46797 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
46759 CCAAGCAACA
46769 TCCAACCAAGCTGCC
1 TCCAACCAAGCTGCC
46784 TCCAACCAAGCTGC
1 TCCAACCAAGCTGC
46798 AACCAACTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.45, G:0.14, T:0.14
Consensus pattern (15 bp):
TCCAACCAAGCTGCC
Found at i:46803 original size:15 final size:15
Alignment explanation
Indices: 46770--46804 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
46760 CAAGCAACAT
**
46770 CCAACCAAGCTGCCT
1 CCAACCAAGCTGCAA
46785 CCAACCAAGCTGCAA
1 CCAACCAAGCTGCAA
46800 CCAAC
1 CCAAC
46805 TGGAAGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.34, C:0.46, G:0.11, T:0.09
Consensus pattern (15 bp):
CCAACCAAGCTGCAA
Found at i:50121 original size:19 final size:20
Alignment explanation
Indices: 50081--50122 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
50071 GTCATTTGCT
*
50081 CTTTTACCCATGTGTCCATC
1 CTTTTACCCACGTGTCCATC
*
50101 CTTTTAGCCACGTGT-CATC
1 CTTTTACCCACGTGTCCATC
50120 CTT
1 CTT
50123 ACTCTCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.14, C:0.33, G:0.12, T:0.40
Consensus pattern (20 bp):
CTTTTACCCACGTGTCCATC
Found at i:51585 original size:59 final size:59
Alignment explanation
Indices: 51493--51612 Score: 204
Period size: 59 Copynumber: 2.0 Consensus size: 59
51483 TGTCTAACTA
* * * *
51493 TATTGTATAGTTCTTTTCTCCTGCTTGACTTTTTCTAATACAAGACATAGGGCACTCAC
1 TATTGTATAGTGCTTTTCTCCTGCTTGAATTTTTCTAATACAAGACACAGGACACTCAC
51552 TATTGTATAGTGCTTTTCTCCTGCTTGAATTTTTCTAATACAAGACACAGGACACTCAC
1 TATTGTATAGTGCTTTTCTCCTGCTTGAATTTTTCTAATACAAGACACAGGACACTCAC
51611 TA
1 TA
51613 CGTGAGTATA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (59 bp):
TATTGTATAGTGCTTTTCTCCTGCTTGAATTTTTCTAATACAAGACACAGGACACTCAC
Found at i:52540 original size:19 final size:19
Alignment explanation
Indices: 52516--52552 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
52506 TGTTTAGTAC
52516 ACCGTTTCATCACCGTTTG
1 ACCGTTTCATCACCGTTTG
52535 ACCGTTTCATCACCGTTT
1 ACCGTTTCATCACCGTTT
52553 TGGGTCCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.32, G:0.14, T:0.38
Consensus pattern (19 bp):
ACCGTTTCATCACCGTTTG
Found at i:52628 original size:21 final size:21
Alignment explanation
Indices: 52602--52660 Score: 68
Period size: 19 Copynumber: 2.9 Consensus size: 21
52592 CGCTGCTCTA
52602 CTAATCTCATCTGTACAGTAC
1 CTAATCTCATCTGTACAGTAC
* * *
52623 CTAATCTAATATGTACA--AT
1 CTAATCTCATCTGTACAGTAC
*
52642 GTAATCTCATCTGTACAGT
1 CTAATCTCATCTGTACAGT
52661 TGCTAAACAG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
19 15 0.50
21 15 0.50
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.36
Consensus pattern (21 bp):
CTAATCTCATCTGTACAGTAC
Found at i:53729 original size:514 final size:513
Alignment explanation
Indices: 52702--53727 Score: 1928
Period size: 514 Copynumber: 2.0 Consensus size: 513
52692 ACCACTCTAC
*
52702 GAAACGTAGCCTTCGTTAGTCGGCTCAGTTCACTTTCTTCACTGTAGCCGAAATTTTCTTCTTTC
1 GAAACGTAGCCTTCGTCAGTCGGCTCAGTTCACTTTCTTCACTGTAGCCGAAATTTTCTTCTTTC
* *
52767 TTCTCTTTTAGTTTCTACACGACTCCATTCCCATTTTTCCCTTGCTTCAACGGAGACTTTAGGTT
66 TTCTCTTTTAGTTTCTACACAACTCCATTCCCATTTTTCCCTTGCTTCAACGGAGACTTTAGGGT
*
52832 ACCTAACGCCAACACTAATCAAAGCAAATCGCACCAGAAGAAGGAAAGACCCACGAAGCTCAAAT
131 ACCTAACGCCAACACTAATCAAAGCAAATCGCACCAGAAGAAGGAAAGACCCACAAAGCTCAAAT
*
52897 GCCGCAAAATACCCACTCGGTAAAACGATGCTCTGTTTTAAGCTATATTTTCTGTTCTTTTCTTC
196 GCCGCAAAATACCCACTCGGTAAAACGATGCTCTGTCTTAAGCTATATTTTCTGTTCTTTTCTTC
*
52962 TTTTTACAGTCTTTTCTAGTTCCTAATGTAGTATATATCTGCCCTATTTTGCACAATGCCCTATG
261 TTTTTACAGTCTTTTCGAGTTCCTAATGTAGTATATATCTGCCCTATTTTGCACAATGCCCTATG
*
53027 TAGAAACTTTTTTCTCAACTCATAAAACTTTGGGCAATTTCATGAAATCTACATAATTGAATAAG
326 TAGAAACTTTTTTCTCAACTCA-AAAACTTTGGACAATTTCATGAAATCTACATAATTGAATAAG
*
53092 GTATATTCTCAATTTCTATTCATTAAAATTAGTGGCTTAATTTTTAGTTAGGGTGTTCAAGATTA
390 GTATATTCTCAATTTCTATTCATTAAAATTAGTGGCTTAATTTTTAATTAGGGTGTTCAAGATTA
53157 CGGAAATTAAAAAAGGATATTTTAATGAAAAATGACTAAATAACATATATCTTTTTTTT
455 CGGAAATTAAAAAAGGATATTTTAATGAAAAATGACTAAATAACATATATCTTTTTTTT
* *
53216 GAAACGTAGCCTTTGTCAGTCGGCTTAGTTCACTTTCTTCACTGTAGCCGAAATTTTCTTCTTTC
1 GAAACGTAGCCTTCGTCAGTCGGCTCAGTTCACTTTCTTCACTGTAGCCGAAATTTTCTTCTTTC
53281 TTCTCTTTTAGTTTCTACACAACTCCATTCCCATTTTTCCCTTGCTTCAACGGAGACTTTAGGGT
66 TTCTCTTTTAGTTTCTACACAACTCCATTCCCATTTTTCCCTTGCTTCAACGGAGACTTTAGGGT
53346 ACCTAACGCCAACACTAATCAAAGCAAATCGCACCAGAAGAAGGAAAGACCCACAAAGCTCAAAT
131 ACCTAACGCCAACACTAATCAAAGCAAATCGCACCAGAAGAAGGAAAGACCCACAAAGCTCAAAT
53411 GCCGCAAAATACCCACTCGGTAAAACGATGCTCTGTCTTAAGCTATATTTTCTGTTCTTTTCTTC
196 GCCGCAAAATACCCACTCGGTAAAACGATGCTCTGTCTTAAGCTATATTTTCTGTTCTTTTCTTC
53476 TTTTTACAGTCTTTTCGAGTTCCTAATGTAGTATATATCTGCCCTATTTTGCACAATGCCCTATG
261 TTTTTACAGTCTTTTCGAGTTCCTAATGTAGTATATATCTGCCCTATTTTGCACAATGCCCTATG
*
53541 TAGAAACTTTTTTCTCAACTC-AAGACTTTGGACAATTTCATGAAATCTACATAATTGAATAAGG
326 TAGAAACTTTTTTCTCAACTCAAAAACTTTGGACAATTTCATGAAATCTACATAATTGAATAAGG
*
53605 TATATTCTCAATTTCTATTCATTAAAGTTAGTGGCTTAATTTTTAATTAGGGTGTTCAAGATTAC
391 TATATTCTCAATTTCTATTCATTAAAATTAGTGGCTTAATTTTTAATTAGGGTGTTCAAGATTAC
53670 GGAAATTAAAAAAGGATATTTTAATGAAAAATGACTAAATAACATATATCTTTTTTTT
456 GGAAATTAAAAAAGGATATTTTAATGAAAAATGACTAAATAACATATATCTTTTTTTT
53728 TTTGAAGAAA
Statistics
Matches: 500, Mismatches: 12, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
512 162 0.32
514 338 0.68
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.36
Consensus pattern (513 bp):
GAAACGTAGCCTTCGTCAGTCGGCTCAGTTCACTTTCTTCACTGTAGCCGAAATTTTCTTCTTTC
TTCTCTTTTAGTTTCTACACAACTCCATTCCCATTTTTCCCTTGCTTCAACGGAGACTTTAGGGT
ACCTAACGCCAACACTAATCAAAGCAAATCGCACCAGAAGAAGGAAAGACCCACAAAGCTCAAAT
GCCGCAAAATACCCACTCGGTAAAACGATGCTCTGTCTTAAGCTATATTTTCTGTTCTTTTCTTC
TTTTTACAGTCTTTTCGAGTTCCTAATGTAGTATATATCTGCCCTATTTTGCACAATGCCCTATG
TAGAAACTTTTTTCTCAACTCAAAAACTTTGGACAATTTCATGAAATCTACATAATTGAATAAGG
TATATTCTCAATTTCTATTCATTAAAATTAGTGGCTTAATTTTTAATTAGGGTGTTCAAGATTAC
GGAAATTAAAAAAGGATATTTTAATGAAAAATGACTAAATAACATATATCTTTTTTTT
Found at i:53793 original size:16 final size:16
Alignment explanation
Indices: 53772--53806 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
53762 TTTTGTGATT
*
53772 TTTGTTCACAATACTG
1 TTTGTTCAAAATACTG
53788 TTTGTTCAAAATACTG
1 TTTGTTCAAAATACTG
53804 TTT
1 TTT
53807 CAAACTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.14, G:0.11, T:0.49
Consensus pattern (16 bp):
TTTGTTCAAAATACTG
Found at i:57350 original size:16 final size:17
Alignment explanation
Indices: 57329--57364 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
57319 AAATCTGAAG
57329 TTGGAAGATGAAT-CTT
1 TTGGAAGATGAATCCTT
*
57345 TTGGAAGGTGAATCCTT
1 TTGGAAGATGAATCCTT
57362 TTG
1 TTG
57365 TTCTGGAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.25, C:0.08, G:0.28, T:0.39
Consensus pattern (17 bp):
TTGGAAGATGAATCCTT
Found at i:60830 original size:402 final size:400
Alignment explanation
Indices: 60085--60882 Score: 1287
Period size: 402 Copynumber: 2.0 Consensus size: 400
60075 CTGTGATGCG
60085 AAAGCTCGTGGAGTTAGTAGTTCACAACCTGAAGAAATTATTGAAGATTCTAGTTTACAAGGTTC
1 AAAGCTCGTGGAGTTAGTAGTTCACAACCTGAAGAAATTATTGAAGATTCTAGTTTACAAGGTTC
* *
60150 CAAGAAACAGTCTCAGGTATTAAAAATATTAGTATTATACCAAATTTTAAAGTTTGTAAGTTTAT
66 CAAGAAACAGTCCCAGGTATT-AAAATATTAGTATTATACCAAATTTTAAAGTTTGTAAGTTTAA
* * *
60215 ACTGTTTCAAAATTGTATCTCATATGTACTCGTATGTCTTTAACAGGTCTTGGCATATGATGTGT
130 ACTGTTTCAAAATTGTATCTCATATGTACTCATATCTCTTTAACAGGCCTTGGCATATGATGTGT
60280 TAGATGATCCTTCAGCTGCTTGTCCCCCTCCTCCCGGTTTTTCAGGAAAGGGGACTAAAGTTGGA
195 TAGATGATCCTTCAGCTGCTTGTCCCCCTCCTCCCGGTTTTTCAGGAAAGGGGACTAAAGTTGGA
* * *
60345 CCGGTGATTAAAATGGAAGGAAGTGACAATGAAAAACCATCTAAACTAAATGAGAAGAATGGTCT
260 CCGGTAATTAAAACGGAAGGAACTGACAATGAAAAACCATCTAAACTAAATGAGAAGAATGGTCT
* *
60410 GCATGTTTCACTAGTCTCCAGCAAGGACAAATCCCACATGATTGCTCCTTCAGTCTGTGGTCCTT
325 GCATGTTTCACCAGTCTCCAGCAAGGACAAATCCCACATCATTGCTCCTTCAGTCTGTGGTCCTT
60475 GTCCTGATGGA
390 GTCCTGATGGA
*
60486 AAAGCTCGTGGAGTTAGTAGTTCAGAACCTGAAGAAATTATTGAAGATTCTAGTTTACAAGGTTC
1 AAAGCTCGTGGAGTTAGTAGTTCACAACCTGAAGAAATTATTGAAGATTCTAGTTTACAAGGTTC
* * **
60551 CAAGAAACCGTCCCAGGTATT-AAA-ATTATTATTATACCAAATTTTAAAGTTTGTGGGTTTAAA
66 CAAGAAACAGTCCCAGGTATTAAAATATTAGTATTATACCAAATTTTAAAGTTTGTAAGTTTAAA
* * * *
60614 CTGTTTCGAAATTGTATCTCCTATGTTCTCATAAATCTTTAATTAACAGGCCTTGGCATATGATG
131 CTGTTTCAAAATTGTATCTCATATGTACTCAT--ATCTCT--TTAACAGGCCTTGGCATATGATG
*
60679 TTTTAGATGATCCTTCAGCTGCTTGTCCCCCTCCTCCCGGTTTTTCAGGAAAGGGGACTAAAGTT
192 TGTTAGATGATCCTTCAGCTGCTTGTCCCCCTCCTCCCGGTTTTTCAGGAAAGGGGACTAAAGTT
* * * *
60744 GGACCGGTAATTAAAACGGAAGGAACTGACAATGAAAAGCCATTTAGACTTAATGAGAAGAATGG
257 GGACCGGTAATTAAAACGGAAGGAACTGACAATGAAAAACCATCTAAACTAAATGAGAAGAATGG
* *
60809 TCTGCAT-TATTCACCAGTCTCCAGCAAGGACAATTCCCACATCTTTGCTCCTTCAGTCTGTGGT
322 TCTGCATGT-TTCACCAGTCTCCAGCAAGGACAAATCCCACATCATTGCTCCTTCAGTCTGTGGT
60873 CCTTGTCCTG
386 CCTTGTCCTG
60883 TAGAGTTGAA
Statistics
Matches: 366, Mismatches: 26, Indels: 9
0.91 0.06 0.02
Matches are distributed among these distances:
398 63 0.17
399 3 0.01
400 4 0.01
401 84 0.23
402 212 0.58
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (400 bp):
AAAGCTCGTGGAGTTAGTAGTTCACAACCTGAAGAAATTATTGAAGATTCTAGTTTACAAGGTTC
CAAGAAACAGTCCCAGGTATTAAAATATTAGTATTATACCAAATTTTAAAGTTTGTAAGTTTAAA
CTGTTTCAAAATTGTATCTCATATGTACTCATATCTCTTTAACAGGCCTTGGCATATGATGTGTT
AGATGATCCTTCAGCTGCTTGTCCCCCTCCTCCCGGTTTTTCAGGAAAGGGGACTAAAGTTGGAC
CGGTAATTAAAACGGAAGGAACTGACAATGAAAAACCATCTAAACTAAATGAGAAGAATGGTCTG
CATGTTTCACCAGTCTCCAGCAAGGACAAATCCCACATCATTGCTCCTTCAGTCTGTGGTCCTTG
TCCTGATGGA
Found at i:69276 original size:21 final size:19
Alignment explanation
Indices: 69238--69277 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
69228 CTTTTCACTG
*
69238 TTTCCCAATTTATCATCAT
1 TTTCCCAATTTACCATCAT
69257 TTTCACCAATATTACCATCAT
1 TTTC-CCAAT-TTACCATCAT
69278 CCGCAGGTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 5 0.28
21 9 0.50
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (19 bp):
TTTCCCAATTTACCATCAT
Found at i:70025 original size:24 final size:24
Alignment explanation
Indices: 69990--70054 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
69980 CTCTCTCCAA
* *
69990 CCTTTCCTTCTCCATCTTC-TTCTT
1 CCTTTCCATCTCC-TCCTCTTTCTT
*
70014 CCTTTCCCTCTCCTCCTCTTTCTT
1 CCTTTCCATCTCCTCCTCTTTCTT
*
70038 TCTTTCCATCTCCTCCT
1 CCTTTCCATCTCCTCCT
70055 TCCTTTTCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 4 0.11
24 32 0.89
ACGTcount: A:0.03, C:0.46, G:0.00, T:0.51
Consensus pattern (24 bp):
CCTTTCCATCTCCTCCTCTTTCTT
Found at i:70897 original size:1 final size:1
Alignment explanation
Indices: 70891--70919 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
70881 GAGCCTCGAG
70891 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
70920 GAAATAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:80462 original size:64 final size:64
Alignment explanation
Indices: 80388--80509 Score: 226
Period size: 64 Copynumber: 1.9 Consensus size: 64
80378 CTAGGAAAGT
80388 AGTGTGAATGACATTACCACATGATACCTAAGATACCACAAACCAAACATAACCTTAATAGAAA
1 AGTGTGAATGACATTACCACATGATACCTAAGATACCACAAACCAAACATAACCTTAATAGAAA
* *
80452 AGTGTGAATGACATTACCACGTGATACCTAAGATACCACAAACTAAACATAACCTTAA
1 AGTGTGAATGACATTACCACATGATACCTAAGATACCACAAACCAAACATAACCTTAA
80510 ACATTTTTAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.45, C:0.22, G:0.11, T:0.21
Consensus pattern (64 bp):
AGTGTGAATGACATTACCACATGATACCTAAGATACCACAAACCAAACATAACCTTAATAGAAA
Done.