Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015291.1 Corchorus capsularis cultivar CVL-1 contig15312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34529

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2974--3376
200
2.0
200
96
0
736
30
14
22
32
1.94
8997--9021
12
2.1
12
100
0
50
0
8
0
92
0.40
12675--12710
11
3.3
11
84
0
54
77
16
5
0
0.94
12961--13042
33
2.5
32
88
2
119
14
42
29
13
1.84
13106--13191
33
2.6
33
90
0
145
11
30
43
15
1.82
13945--13990
18
2.4
18
85
10
56
34
6
0
58
1.24
13951--13991
18
2.4
17
88
8
57
31
9
0
58
1.31
13960--13997
18
2.1
18
90
0
58
28
13
0
57
1.36
15308--15359
24
2.2
24
85
0
68
65
5
7
21
1.40
21469--21510
19
2.2
19
95
0
75
0
35
21
42
1.53
21545--21630
42
2.0
42
100
0
172
46
11
18
23
1.82
22030--22073
21
2.1
21
83
8
54
18
31
9
40
1.81
22130--22342
32
6.6
32
94
0
354
15
42
28
13
1.85
22380--22537
33
4.8
33
90
3
230
11
34
43
11
1.77
22601--22686
32
2.7
32
87
3
120
10
43
38
8
1.69
30595--30652
27
2.2
26
84
12
73
50
12
8
29
1.69
31839--31906
28
2.3
31
82
7
79
38
14
27
19
1.91

Tables:   1

The End!