Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015293.1 Corchorus capsularis cultivar CVL-1 contig15314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20024

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5007--5035
6
4.8
6
100
0
58
31
34
0
34
1.58
9113--9260
30
4.7
31
68
13
104
22
29
25
22
1.99
9089--9264
97
1.8
97
100
0
352
24
28
24
22
1.99
9285--9359
29
2.6
29
85
8
107
41
17
21
20
1.90
9711--9761
2
25.5
2
87
0
75
0
5
43
50
1.26
15435--15492
19
3.1
19
66
26
50
15
8
12
63
1.50
15971--16008
19
2.0
20
85
15
53
28
5
2
63
1.30
16174--16258
22
3.9
22
68
10
66
34
11
17
36
1.86
16265--16306
22
1.9
22
85
9
59
26
7
21
45
1.77
16345--16387
22
2.0
22
86
9
61
41
9
18
30
1.82
16378--16474
22
4.4
22
75
14
92
32
9
17
40
1.81
16437--16676
22
10.7
22
69
15
102
40
10
13
35
1.79
16572--16762
44
4.4
44
74
9
160
42
10
13
34
1.78
16494--16740
22
11.3
22
69
10
132
41
10
14
33
1.80
16845--17324
22
22.0
21
69
16
146
37
10
16
35
1.82
16845--17315
66
7.2
62
70
14
226
37
10
15
36
1.82
16845--17315
44
10.8
44
71
11
213
37
10
15
36
1.82
17297--17342
22
2.1
22
84
4
58
56
4
15
23
1.57
18025--18058
14
2.6
13
86
13
52
44
2
0
52
1.16

Tables:   1

The End!