Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015297.1 Corchorus capsularis cultivar CVL-1 contig15318, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3019
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30


Found at i:399 original size:15 final size:15

Alignment explanation


    Indices: 379--412  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        369 ATTGGATTTA

                            
        379 TTATTACTAA-TTGTT
          1 TTATTA-TAACTTGTT

                           
        394 TTATTATAACTTGTT
          1 TTATTATAACTTGTT

                
        409 TTAT
          1 TTAT

        413 AAGTTGTTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14    3  0.17
  15   15  0.83

ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62


Consensus pattern (15 bp):   
TTATTATAACTTGTT
Done.