Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015298.1 Corchorus capsularis cultivar CVL-1 contig15319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8815

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
594--627
15
2.3
15
90
10
52
26
5
5
61
1.42
1651--1712
23
2.8
22
76
13
72
40
17
6
35
1.76
1628--1751
22
5.6
22
70
12
74
39
17
8
34
1.79
1796--1899
22
4.6
23
82
5
72
37
19
10
32
1.86
1844--1913
22
3.2
22
97
0
131
35
17
12
34
1.88
2000--2104
25
4.4
24
72
25
73
33
40
20
5
1.77
2020--2130
16
6.9
16
79
8
127
35
37
18
8
1.81
2020--2130
48
2.3
48
83
9
145
35
37
18
8
1.81
2020--2133
32
3.6
32
88
4
151
35
37
19
7
1.81
2239--2278
21
1.9
21
89
0
62
32
7
5
55
1.50
2238--2285
21
2.3
21
81
0
60
31
6
4
58
1.42
2732--2831
16
6.4
16
75
9
98
35
37
20
8
1.82
2732--2831
46
2.1
48
83
3
123
35
37
20
8
1.82
2917--2980
22
2.9
23
76
4
78
37
15
9
37
1.80
4935--4965
10
3.1
10
100
0
62
32
29
0
38
1.57
7108--7142
15
2.3
15
100
0
70
37
5
5
51
1.50

Tables:   1

The End!