Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015300.1 Corchorus capsularis cultivar CVL-1 contig15321, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7932
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:5416 original size:6 final size:6

Alignment explanation


    Indices: 5407--5495  Score: 70
    Period size: 6  Copynumber: 14.3  Consensus size: 6

       5397 AGAGGATGAG

                             * *      * *    *   *        *        
       5407 AGAGAT AGAGAT AGAAAC AGAGAC CGAGAG AGGGAT AGAGGT AGAGAT
          1 AGAGAT AGAGAT AGAGAT AGAGAT AGAGAT AGAGAT AGAGAT AGAGAT

                        *         *                        
       5455 AGAGATCAT AGGGAT AGAGAG AGAGAT AGAGAT AGAGAT AG
          1 AGAG---AT AGAGAT AGAGAT AGAGAT AGAGAT AGAGAT AG

       5496 GGGTAGGCAT


Statistics
Matches: 65,  Mismatches: 15, Indels: 6
        0.76            0.17        0.07

Matches are distributed among these distances:
   6   60  0.92
   9    5  0.08

ACGTcount: A:0.46, C:0.04, G:0.37, T:0.12


Consensus pattern (6 bp):   
AGAGAT
Done.