Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015301.1 Corchorus capsularis cultivar CVL-1 contig15322, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53822

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1275--1299
10
2.5
10
100
0
50
24
8
20
48
1.76
2114--2256
46
3.1
45
84
5
178
31
16
23
28
1.96
2416--2532
36
3.2
36
87
2
164
26
22
24
26
2.00
2755--2929
45
3.9
45
88
4
255
29
17
24
29
1.97
3076--3143
20
3.5
20
86
5
97
26
17
30
25
1.97
3116--3441
45
7.2
45
75
9
277
26
15
26
31
1.96
3505--3614
47
2.3
49
83
9
129
38
27
9
25
1.86
4034--4124
29
3.0
29
75
9
101
27
14
26
31
1.95
4008--4169
61
2.6
61
85
9
195
27
14
24
33
1.94
4034--4137
29
3.5
29
75
7
100
28
14
26
29
1.95
3950--4184
126
1.9
126
82
6
296
26
14
25
33
1.95
4120--4276
40
4.0
40
76
6
169
24
17
19
38
1.93
4301--4537
111
2.2
109
87
3
334
33
22
21
22
1.97
4495--4625
68
1.9
68
81
3
156
32
19
22
25
1.97
4906--4941
18
2.0
18
94
0
63
19
33
19
27
1.96
5443--5531
46
1.9
46
95
0
160
35
8
25
29
1.87
11874--11903
10
3.0
10
90
0
51
26
10
13
50
1.73
37838--37879
3
14.3
3
85
5
59
66
0
2
30
1.04
41533--41561
2
14.5
2
100
0
58
51
0
0
48
1.00
43170--43199
2
15.0
2
92
0
51
53
0
0
46
1.00
43196--43229
13
2.7
13
86
4
52
14
0
29
55
1.40
44801--44831
7
4.4
7
100
0
62
29
12
0
58
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48619--48648
14
2.1
14
100
0
60
30
6
13
50
1.67
50743--50771
10
2.7
11
89
10
51
51
0
37
10
1.36
51994--52072
29
2.7
31
82
9
94
20
17
2
59
1.49
51994--52084
15
5.6
15
68
22
51
19
17
3
59
1.51
52136--52219
43
2.0
43
85
4
116
16
26
7
50
1.71
52136--52209
21
3.5
21
78
7
78
16
25
8
50
1.72
52403--52666
38
7.2
38
77
13
275
25
18
6
48
1.72
52403--52657
32
7.2
32
73
20
170
25
18
6
48
1.72
52398--52548
71
2.2
70
89
2
232
25
19
7
48
1.74
52466--52666
39
5.4
38
76
11
209
25
18
6
48
1.73
52403--52674
109
2.5
109
92
1
438
25
18
6
48
1.73
52512--52657
71
2.1
70
84
6
188
26
19
6
47
1.72
53217--53451
100
2.4
100
90
2
366
38
16
3
41
1.66
53218--53451
50
4.7
49
79
7
233
38
15
3
41
1.66

Tables:   1

The End!