Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015302.1 Corchorus capsularis cultivar CVL-1 contig15323, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4535
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29


Found at i:297 original size:27 final size:27

Alignment explanation


    Indices: 232--308  Score: 111
    Period size: 26  Copynumber: 2.9  Consensus size: 27

        222 GGTGATTCTT

                     *            *    
        232 AAAAATGACTAAAATGCCCCTGAGTGC
          1 AAAAATGACCAAAATGCCCCTGGGTGC

                                       
        259 -AAAATGACCAAAATGCCCCTGGGTGC
          1 AAAAATGACCAAAATGCCCCTGGGTGC

                           *   *    
        285 AAAAATGACCAAAATACCCTTGGG
          1 AAAAATGACCAAAATGCCCCTGGG

        309 CGACTCTAAT


Statistics
Matches: 45,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  26   24  0.53
  27   21  0.47

ACGTcount: A:0.40, C:0.23, G:0.19, T:0.17


Consensus pattern (27 bp):   
AAAAATGACCAAAATGCCCCTGGGTGC

Done.