Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015308.1 Corchorus capsularis cultivar CVL-1 contig15329, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30895

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
934--978
19
2.4
18
85
10
56
42
2
2
53
1.25
3829--3942
56
2.0
56
94
0
201
46
7
13
33
1.70
4258--4520
94
2.7
94
81
13
334
30
16
14
38
1.88
4325--4536
102
2.1
104
92
1
356
32
16
13
38
1.87
8320--8348
5
5.8
5
100
0
58
82
0
17
0
0.66
19508--19550
22
2.0
22
100
0
86
23
9
6
60
1.51
20471--20573
31
3.4
31
73
15
115
35
14
31
18
1.91
20500--20612
29
3.8
29
76
13
131
39
16
26
16
1.90
20471--20602
60
2.2
60
100
0
264
37
15
29
18
1.91
21633--21751
2
64.0
2
67
22
55
40
2
3
53
1.31
22999--23040
19
2.2
19
95
0
75
14
16
26
42
1.86
23115--23144
12
2.5
12
94
0
51
33
3
20
43
1.68
25587--25663
14
5.5
14
75
6
57
10
10
20
58
1.60
25794--25892
49
2.0
49
98
0
189
20
12
19
48
1.80
25886--25991
39
2.7
39
92
2
169
14
10
20
54
1.69
25923--25990
17
3.7
17
71
17
64
14
10
20
54
1.69
26513--26541
7
4.1
7
100
0
58
41
0
27
31
1.56
27342--27471
65
2.0
65
89
0
197
25
20
22
32
1.98
30766--30805
20
2.0
20
95
0
71
47
5
20
27
1.70

Tables:   1

The End!