Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015309.1 Corchorus capsularis cultivar CVL-1 contig15330, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2996
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:1974 original size:13 final size:13

Alignment explanation


    Indices: 1958--1982  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1948 AAATGAAATT

                         
       1958 GAAAAAAAAAAAC
          1 GAAAAAAAAAAAC

                        
       1971 GAAAAAAAAAAA
          1 GAAAAAAAAAAA

       1983 ACTGTTTTCT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00


Consensus pattern (13 bp):   
GAAAAAAAAAAAC

Found at i:2125 original size:22 final size:22

Alignment explanation


    Indices: 2100--2145  Score: 76
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       2090 AATTGGGATT

                                   
       2100 CCAATTGA-CCCCAACCCGGGAC
          1 CCAATTGACCCCCAA-CCGGGAC

                                  
       2122 CCAATTGACCCCCAACCGGGAC
          1 CCAATTGACCCCCAACCGGGAC

              
       2144 CC
          1 CC

       2146 CGGGACCCAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  22   17  0.74
  23    6  0.26

ACGTcount: A:0.26, C:0.48, G:0.17, T:0.09


Consensus pattern (22 bp):   
CCAATTGACCCCCAACCGGGAC

Done.