Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015316.1 Corchorus capsularis cultivar CVL-1 contig15337, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41179

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
828--877
21
2.5
20
84
12
66
76
0
22
2
0.89
829--876
13
3.5
13
82
5
60
75
0
22
2
0.91
4195--4225
2
15.5
2
93
0
53
48
0
3
48
1.17
4613--4841
117
1.9
117
91
4
372
42
9
2
44
1.50
8671--9119
199
2.3
198
88
2
686
33
13
18
34
1.90
9889--10947
198
5.3
198
87
3
1488
33
13
17
34
1.89
9889--10945
399
2.7
396
88
4
1511
34
13
17
34
1.89
11284--11314
16
1.9
16
93
0
53
54
0
9
35
1.33
11713--11771
29
2.0
29
96
0
109
38
15
8
37
1.78
15655--16583
310
3.0
310
99
0
1824
39
4
9
46
1.58
18488--18546
30
2.0
30
89
0
91
42
15
5
37
1.69
18571--18608
2
18.0
2
89
10
58
47
0
5
47
1.24
18571--18611
12
3.2
13
93
6
66
46
0
7
46
1.30
19381--19437
30
1.9
30
96
0
105
22
29
22
24
1.99
19861--19900
19
2.1
19
100
0
80
35
20
17
27
1.95
22306--22336
2
15.5
2
100
0
62
48
0
0
51
1.00
29535--30197
330
2.0
330
98
0
1281
30
9
15
44
1.77
33956--34308
174
2.0
174
94
0
616
39
9
23
27
1.86

Tables:   1

The End!