Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015321.1 Corchorus capsularis cultivar CVL-1 contig15342, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13813

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
95--126
3
10.7
3
100
0
64
34
0
0
65
0.93
929--984
20
2.7
21
75
13
71
35
3
8
51
1.51
1011--1078
16
4.1
16
75
7
64
7
10
27
54
1.61
1407--1456
14
3.6
14
75
5
57
60
8
22
10
1.55
1399--1461
27
2.3
27
91
2
99
57
7
26
7
1.55
1411--1453
13
3.2
13
74
6
50
58
6
23
11
1.57
1495--1541
3
15.7
3
100
0
94
34
0
0
65
0.93
5471--5527
28
2.0
28
100
0
114
17
10
43
28
1.82
6577--6622
23
2.0
23
100
0
92
17
34
30
17
1.93
8347--8381
11
3.2
11
100
0
70
0
34
0
65
0.93
10184--10376
27
6.9
28
78
10
162
18
22
3
55
1.56
10365--10404
21
1.9
21
84
0
53
27
22
0
50
1.50
10366--10700
36
9.5
36
83
7
409
20
22
3
54
1.59
10746--10884
40
3.7
39
68
21
116
21
24
2
51
1.62
10849--11063
32
6.8
32
86
4
274
20
23
4
52
1.63
10746--10972
72
3.3
71
79
11
222
21
22
3
52
1.60
12422--12473
25
2.1
25
100
0
104
11
48
25
15
1.78

Tables:   1

The End!