Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015326.1 Corchorus capsularis cultivar CVL-1 contig15347, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7575
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31


Found at i:3688 original size:16 final size:17

Alignment explanation


    Indices: 3669--3702  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

       3659 AATAAAAAGG

                             
       3669 ATTTAAAGAAAAA-AAA
          1 ATTTAAAGAAAAATAAA

                  *          
       3685 ATTTAATGAAAAATAAA
          1 ATTTAAAGAAAAATAAA

             
       3702 A
          1 A

       3703 AAAAATTTGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16   12  0.75
  17    4  0.25

ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24


Consensus pattern (17 bp):   
ATTTAAAGAAAAATAAA

Found at i:5019 original size:21 final size:20

Alignment explanation


    Indices: 4978--5016  Score: 78
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       4968 TCAGTTTTTC

                                
       4978 TTTTCTTTTCTTTTTCCCCT
          1 TTTTCTTTTCTTTTTCCCCT

                               
       4998 TTTTCTTTTCTTTTTCCCC
          1 TTTTCTTTTCTTTTTCCCC

       5017 CTTCTATTTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69


Consensus pattern (20 bp):   
TTTTCTTTTCTTTTTCCCCT
Done.