Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015334.1 Corchorus capsularis cultivar CVL-1 contig15355, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51662

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4597--4681
23
3.7
23
82
1
100
38
14
4
42
1.66
4400--4826
22
19.6
22
70
14
192
36
15
10
37
1.81
4311--4892
22
26.9
21
68
15
149
36
15
9
38
1.80
4983--5041
29
2.0
29
100
0
118
37
11
10
40
1.76
5025--5245
22
9.9
22
68
19
84
35
15
9
39
1.81
5189--5269
22
3.7
21
78
4
72
38
20
6
34
1.78
5419--5483
24
2.8
23
90
4
96
33
16
15
33
1.91
5365--5488
22
5.4
23
81
10
103
37
20
9
31
1.85
5861--6013
81
1.9
81
91
2
254
41
15
15
28
1.87
13728--13786
3
19.3
3
96
3
109
64
1
0
33
1.04
15045--15095
23
2.2
23
100
0
102
27
27
19
25
1.99
18243--18293
23
2.3
23
93
3
86
25
7
27
39
1.83
19522--20057
35
15.3
35
81
10
480
31
18
10
39
1.85
19522--20057
70
7.7
70
82
7
608
31
18
10
39
1.85
19741--19821
17
4.9
16
67
18
51
32
14
11
41
1.81
19522--20034
175
2.9
172
84
8
576
31
18
10
39
1.84
19825--20120
35
9.1
31
71
20
178
31
19
9
39
1.83
20062--20137
31
2.5
31
86
2
91
30
18
10
40
1.84
23357--23401
3
14.0
3
95
4
63
31
0
0
68
0.89
36527--36556
2
15.0
2
100
0
60
50
0
50
0
1.00
41392--41436
21
2.1
21
87
0
63
17
33
11
37
1.85
41629--41720
33
2.8
34
79
8
111
16
34
38
10
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41629--41680
17
3.1
17
71
15
54
15
34
36
13
1.87
41809--41894
33
2.6
33
83
5
104
11
40
33
13
1.81
41956--42041
33
2.6
33
87
1
120
13
27
41
16
1.86
44853--44895
20
2.2
20
87
8
61
46
0
2
51
1.13
50807--50847
3
13.7
3
100
0
82
0
31
0
68
0.90

Tables:   1

The End!