Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015336.1 Corchorus capsularis cultivar CVL-1 contig15357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27871

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1659--1871
109
1.9
110
91
2
349
37
11
1
49
1.50
4001--4039
17
2.2
18
86
4
53
38
5
0
56
1.22
4885--4959
24
3.0
25
79
11
68
34
2
17
45
1.62
4917--4969
15
3.3
16
82
12
56
37
1
9
50
1.46
4926--5006
2
44.0
2
75
20
79
45
1
2
50
1.22
4926--5005
24
3.0
27
80
17
96
45
1
2
51
1.22
4941--5006
23
3.0
22
83
16
91
48
0
0
51
1.00
12181--12581
210
1.9
210
80
3
475
27
24
14
33
1.94
22639--22967
142
2.4
138
89
5
495
37
9
10
42
1.72
23252--23645
139
2.8
139
82
7
447
36
10
8
43
1.71
25276--25309
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!