Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015337.1 Corchorus capsularis cultivar CVL-1 contig15358, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33765

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
423--490
31
2.2
31
89
0
100
36
16
17
29
1.92
1076--1489
224
1.8
224
88
1
632
32
16
17
33
1.92
3839--3867
6
4.8
6
100
0
58
0
31
68
0
0.89
4415--4539
68
1.9
67
88
5
191
50
8
12
28
1.69
7997--8086
45
2.0
45
91
4
146
27
23
16
32
1.96
8725--8777
14
3.7
14
85
5
79
39
3
0
56
1.17
8720--8777
29
2.0
29
100
0
116
37
3
0
58
1.15
16185--16222
5
8.2
5
91
8
55
0
13
0
86
0.56
16187--16222
9
4.0
9
92
7
56
0
11
0
88
0.50
16185--16222
14
2.7
14
92
8
60
0
13
0
86
0.56
21418--21488
28
2.4
28
81
9
79
25
19
16
38
1.93

Tables:   1

The End!