Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015339.1 Corchorus capsularis cultivar CVL-1 contig15360, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34874

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9984--10034
20
2.5
21
83
6
77
54
15
3
25
1.58
12340--12380
3
13.7
3
100
0
82
0
31
0
68
0.90
14219--14249
3
10.3
3
92
0
53
3
35
0
61
1.12
19726--19787
31
2.0
32
90
6
101
29
16
4
50
1.65
20048--20137
38
2.4
37
80
7
101
15
20
8
55
1.66
20348--20510
42
4.0
40
73
12
109
39
8
15
36
1.79
20384--21063
22
31.1
22
67
14
167
40
9
15
35
1.79
20898--20943
23
2.0
24
91
4
76
60
6
8
23
1.49
20971--21122
62
2.5
62
92
0
241
43
9
12
34
1.74
20970--21078
22
5.2
20
70
12
69
45
10
11
32
1.74
23306--23353
24
2.0
24
92
8
80
6
27
8
58
1.51
33608--33651
21
2.1
21
86
0
61
18
6
56
18
1.62

Tables:   1

The End!