Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015345.1 Corchorus capsularis cultivar CVL-1 contig15366, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4347
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30


Found at i:1388 original size:24 final size:24

Alignment explanation


    Indices: 1343--1388  Score: 56
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       1333 AAGGAAAATC

                      *   *         
       1343 AGTAAAACCAGGATCATAAATCAT
          1 AGTAAAACCAAGATAATAAATCAT

                   *         *    
       1367 AGTAAAATCAAGATAATCAATC
          1 AGTAAAACCAAGATAATAAATC

       1389 CAAAACCAAG


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  24   18  1.00

ACGTcount: A:0.52, C:0.15, G:0.11, T:0.22


Consensus pattern (24 bp):   
AGTAAAACCAAGATAATAAATCAT
Done.