Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015366.1 Corchorus capsularis cultivar CVL-1 contig15387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 110498
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:1465 original size:79 final size:79
Alignment explanation
Indices: 1334--1491 Score: 316
Period size: 79 Copynumber: 2.0 Consensus size: 79
1324 GCTCTTACCC
1334 TGTTTTTTTTGTAGCCTAACTTGAGGGAGAACTTGCATTTCAGGACAACCAAAGGGCTAGCCAAA
1 TGTTTTTTTTGTAGCCTAACTTGAGGGAGAACTTGCATTTCAGGACAACCAAAGGGCTAGCCAAA
1399 TAGCTGAACAACAA
66 TAGCTGAACAACAA
1413 TGTTTTTTTTGTAGCCTAACTTGAGGGAGAACTTGCATTTCAGGACAACCAAAGGGCTAGCCAAA
1 TGTTTTTTTTGTAGCCTAACTTGAGGGAGAACTTGCATTTCAGGACAACCAAAGGGCTAGCCAAA
1478 TAGCTGAACAACAA
66 TAGCTGAACAACAA
1492 CATCATATAG
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27
Consensus pattern (79 bp):
TGTTTTTTTTGTAGCCTAACTTGAGGGAGAACTTGCATTTCAGGACAACCAAAGGGCTAGCCAAA
TAGCTGAACAACAA
Found at i:3535 original size:2 final size:2
Alignment explanation
Indices: 3530--3556 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
3520 AATGTGTGTG
3530 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
3557 GTAGAAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3987 original size:15 final size:15
Alignment explanation
Indices: 3967--3999 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
3957 GATCTATCTA
*
3967 TATCTATATTTATAC
1 TATCTATATCTATAC
3982 TATCTATATCTATAC
1 TATCTATATCTATAC
3997 TAT
1 TAT
4000 ATTAAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (15 bp):
TATCTATATCTATAC
Found at i:4377 original size:132 final size:131
Alignment explanation
Indices: 4138--4378 Score: 369
Period size: 132 Copynumber: 1.8 Consensus size: 131
4128 TGGTGCTAGA
4138 AAAAACTCTATTTTTATTTAATTAAATCTAATATCCCTATAACTATTTAATTTTTACCATTTTAC
1 AAAAACTCTATTTTTATTTAATTAAATCTAATATCCCTATAACTATTTAATTTTTACCATTTTAC
* * **
4203 TATATTAATTTAAAAAATTATATATATTAAATTTTTTTAAATATACTTTTATAGTTTTACTTAAC
66 AATATTAATTTAAAAAATTAGATATATTAAATTTTTAAAAATATACTTTTATAGTTTTACTTAAC
4268 T
131 T
* * *
4269 AAAAACTCTATTTTTTATTTAATTAAATCTAATATCCTTATACCTATTTTATTTTTACCATTTTA
1 AAAAACTCTA-TTTTTATTTAATTAAATCTAATATCCCTATAACTATTTAATTTTTACCATTTTA
*
4334 CAA-ATTTAA-TTAAAAACTTAGATATATTAGAATTTTTAAAAATAT
65 CAATA-TTAATTTAAAAAATTAGATATATTA-AATTTTTAAAAATAT
4379 TTCTTAAATG
Statistics
Matches: 99, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
131 29 0.29
132 70 0.71
ACGTcount: A:0.40, C:0.10, G:0.01, T:0.49
Consensus pattern (131 bp):
AAAAACTCTATTTTTATTTAATTAAATCTAATATCCCTATAACTATTTAATTTTTACCATTTTAC
AATATTAATTTAAAAAATTAGATATATTAAATTTTTAAAAATATACTTTTATAGTTTTACTTAAC
T
Found at i:5993 original size:78 final size:78
Alignment explanation
Indices: 5898--6045 Score: 208
Period size: 78 Copynumber: 1.9 Consensus size: 78
5888 TTGTTTAAAT
* * * * * * *
5898 TATTATAGTTTTTCTCTATTAAAAAACTCTGTTTTTATTTAATTAAATCTAATA-TTTTCTAACT
1 TATTATAATTTTACTCTACT-AAAAACTATATTTTTATTTAATTAAATATAATATTTTTATAACT
5962 ATTTTTAAAAACTC
65 ATTTTTAAAAACTC
*
5976 TATTATAATTTTACTCTACTAAAACCTATATTTTTATTTAATTAAATATAATATTTTTATAACTA
1 TATTATAATTTTACTCTACTAAAAACTATATTTTTATTTAATTAAATATAATATTTTTATAACTA
6041 TTTTT
66 TTTTT
6046 TACCATTTGA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
77 29 0.48
78 32 0.52
ACGTcount: A:0.36, C:0.10, G:0.01, T:0.53
Consensus pattern (78 bp):
TATTATAATTTTACTCTACTAAAAACTATATTTTTATTTAATTAAATATAATATTTTTATAACTA
TTTTTAAAAACTC
Found at i:8719 original size:2 final size:2
Alignment explanation
Indices: 8712--8741 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8702 TTTGAACATA
8712 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8742 GTGCAACAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11061 original size:439 final size:435
Alignment explanation
Indices: 10210--11270 Score: 1255
Period size: 439 Copynumber: 2.4 Consensus size: 435
10200 CATCTAGATA
* * **** * * *
10210 AAAAAATAATATGAAATTAAATAGATTGTCAATCGAAATCACGAAATTTTA-AAAGTATTTTTTA
1 AAAAAATTATATGAGATTAAATAGACCAACAATCAAAATCAC-AAAATTTAGAAAGCATTTTTTA
* * *
10274 GAATTGAAACATGAAAATTAGCTTTTGAGTCTTTCATGAAAGTTGTAGATCATAAAATTACCTTT
65 GAATT-AAACATAAAAATTTGCTTTTGAGTCTTT-ATGAAAGTTGTAGATCATGAAATTACCTTT
* * * **
10339 TAATAGACACCTTAATTACCTTAATTGGACAAATAGAACAAAGAAAATTAAAAAAAATGAAATGT
128 TAATAGACACATAAATCACCTTAATCAGACAAATAGAAC-AAGAAAATT-AAAAAAATGAAATGT
*
10404 TAAATCGAATAAGATAGAATTTGTAAATGACTAAGTAGTATAAAATAGAAAAGCATGAGGGTCAT
191 TAAATCGAATAAGATAGAATTTGTAAAGGACTAAGTAGTATAAAATAGAAAAGCATGAGGGTCAT
* * * *
10469 TTGATAACTAATTCAAATAAGAAAATATTTCTTAATGGATATCTTGAAACATAAAAATTCCCTTT
256 TTGATAAATAATCCAAATAAGAAAATATTTCTTAATGGAGATCTTGAAACATAAAAATTCCCATT
* * * *
10534 TGAAACCTTCATGATACTTGTAGATCAAATTAACTTTCGGGTTCTTCATGAAAGTCGTAGATCAT
321 TGAAACCTTCATGAAACTCGTAGATCAAATTAACGTTCGGGTTCTTCATGAAAGTCGTAAATCAT
* *
10599 ACAGTAACCGTTTAACCGACACTTGAATAACTTT-AATCGGACATGTGGATC
386 ACAATAACCGTTTAACCGACACTTCAATAA-TTTCAATCGGACATGTGGA-C
* * *
10650 -GAAAATTATATG-GTATTAAATAGACCAACAATCAAAA-CGACCAAATTTAGAAAGTATTTTTT
1 AAAAAATTATATGAG-ATTAAATAGACCAACAATCAAAATC-ACAAAATTTAGAAAGCA--TTTT
* * * *
10712 TTTGAATTAAAACATAAAAATTTGCTTTTGAGCCCTTTATGAAAGTTATAGATTATGAAATTACC
62 TTAGAATT-AAACATAAAAATTTGCTTTTGAG-TCTTTATGAAAGTTGTAGATCATGAAATTACC
* * * * *
10777 TTTTAATAGACACATAAATCAACTTAACCAGACAAATAGAAC-AGAGAA-T-AAAAAATTAAATT
125 TTTTAATAGACACATAAATCACCTTAATCAGACAAATAGAACAAGAAAATTAAAAAAATGAAATG
* * *
10839 TTAAA-CGTTAGATTAAGATCGAATTTGTAAAGGACTAAGTAGTATAAAGTAGAAAA-TATGAGG
190 TTAAATCG--A-A-TAAGATAGAATTTGTAAAGGACTAAGTAGTATAAAATAGAAAAGCATGAGG
* * * **
10902 GTCATTTGATAAATAATCCAAATAAGAAAATATTTGTTGATGGAGATCTTGGAGTATAAAAATTC
251 GTCATTTGATAAATAATCCAAATAAGAAAATATTTCTTAATGGAGATCTTGAAACATAAAAATTC
* *
10967 CCATTTGAATCCTTCATGAAACTCGTAGATCAAATTTAGCGTTCGGGTTCTTCATGAAAGTCGTA
316 CCATTTGAAACCTTCATGAAACTCGTAGATCAAA-TTAACGTTCGGGTTCTTCATGAAAGTCGTA
* * *
11032 AATCATGCAATAACCTTTTAACTGACACTTCAATAATTTCAATCGGACATGTGGAC
380 AATCATACAATAACCGTTTAACCGACACTTCAATAATTTCAATCGGACATGTGGAC
* * ** * *
11088 AAAAAATTATATGAGATTAAATTGATCGGCAATCAAAATCACAAAATTTCGGAAGCATTTTTTAG
1 AAAAAATTATATGAGATTAAATAGACCAACAATCAAAATCACAAAATTTAGAAAGCATTTTTTAG
* * *
11153 AATTAAACATTAAAA-TTGTCTTTTGAGTTCTTCATGAAAATTGTAGATCATGAAATTACCTTTT
66 AATTAAACATAAAAATTTG-CTTTTGAG-TCTTTATGAAAGTTGTAGATCATGAAATTACCTTTT
* * * * *
11217 AATAGACACTTGAATCACCTTAATCAGACAAATAGAA-AAAAAAAATACAAAAAT
129 AATAGACACATAAATCACCTTAATCAGACAAATAGAACAAGAAAATTAAAAAAAT
11271 AAAAGTCAAC
Statistics
Matches: 526, Mismatches: 76, Indels: 40
0.82 0.12 0.06
Matches are distributed among these distances:
435 5 0.01
436 102 0.19
437 13 0.02
438 112 0.21
439 197 0.37
440 2 0.00
441 91 0.17
442 4 0.01
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.32
Consensus pattern (435 bp):
AAAAAATTATATGAGATTAAATAGACCAACAATCAAAATCACAAAATTTAGAAAGCATTTTTTAG
AATTAAACATAAAAATTTGCTTTTGAGTCTTTATGAAAGTTGTAGATCATGAAATTACCTTTTAA
TAGACACATAAATCACCTTAATCAGACAAATAGAACAAGAAAATTAAAAAAATGAAATGTTAAAT
CGAATAAGATAGAATTTGTAAAGGACTAAGTAGTATAAAATAGAAAAGCATGAGGGTCATTTGAT
AAATAATCCAAATAAGAAAATATTTCTTAATGGAGATCTTGAAACATAAAAATTCCCATTTGAAA
CCTTCATGAAACTCGTAGATCAAATTAACGTTCGGGTTCTTCATGAAAGTCGTAAATCATACAAT
AACCGTTTAACCGACACTTCAATAATTTCAATCGGACATGTGGAC
Found at i:12341 original size:2 final size:2
Alignment explanation
Indices: 12330--12361 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
12320 TATTGTTTCT
12330 TA TA -A TA TA TA TA TA TA TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12362 AAAGAGGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 26 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:18262 original size:17 final size:16
Alignment explanation
Indices: 18240--18271 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
18230 GACTTTTCAG
18240 AAAAAAATTAAGAAATC
1 AAAAAAATTAA-AAATC
18257 AAAAAAATTAAAAAT
1 AAAAAAATTAAAAAT
18272 TAATTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAAAAATTAAAAATC
Found at i:18286 original size:26 final size:27
Alignment explanation
Indices: 18245--18320 Score: 77
Period size: 26 Copynumber: 2.8 Consensus size: 27
18235 TTCAGAAAAA
*
18245 AATTAAGAAATCAAAAAAATTAAAA-ATT
1 AATTAACAAAT-AAAAAAATTAAAAGA-T
*
18273 AATTAA-AAATAAAAAAATGAAAAGAT
1 AATTAACAAATAAAAAAATTAAAAGAT
18299 -ATTAACAAATAAATAAACATTA
1 AATTAACAAATAAA-AAA-ATTA
18321 TTTTTTTAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
25 5 0.12
26 20 0.48
27 8 0.19
28 9 0.21
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.24
Consensus pattern (27 bp):
AATTAACAAATAAAAAAATTAAAAGAT
Found at i:21932 original size:6 final size:6
Alignment explanation
Indices: 21921--21947 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
21911 AAAGCAAAGC
21921 AAATCT AAATCT AAATCT AAATCT AAA
1 AAATCT AAATCT AAATCT AAATCT AAA
21948 GCAGATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATCT
Found at i:28525 original size:30 final size:32
Alignment explanation
Indices: 28486--28552 Score: 88
Period size: 30 Copynumber: 2.2 Consensus size: 32
28476 ATAAAAAGCA
28486 GAAACAGAAAA-TAATTTTTTTT-AAAAAAA-CG
1 GAAACAGAAAACT--TTTTTTTTCAAAAAAATCG
28517 GAAA-AGAAAACTTTTTTTTTCAAAAAAATCG
1 GAAACAGAAAACTTTTTTTTTCAAAAAAATCG
28548 GAAAC
1 GAAAC
28553 CCTAATTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
29 8 0.25
30 13 0.41
31 11 0.34
ACGTcount: A:0.52, C:0.09, G:0.10, T:0.28
Consensus pattern (32 bp):
GAAACAGAAAACTTTTTTTTTCAAAAAAATCG
Found at i:28646 original size:26 final size:26
Alignment explanation
Indices: 28609--28663 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
28599 AGAAAAACGG
28609 AAAAAAACATTTTTTTTTATCGACGC
1 AAAAAAACATTTTTTTTTATCGACGC
*
28635 AAAAACAA-ATTTTTTTTTATCGATGC
1 AAAAA-AACATTTTTTTTTATCGACGC
28661 AAA
1 AAA
28664 CTTTCTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (26 bp):
AAAAAAACATTTTTTTTTATCGACGC
Found at i:29000 original size:6 final size:6
Alignment explanation
Indices: 28989--29015 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
28979 AAAGCAAAGC
28989 AAATCT AAATCT AAATCT AAATCT AAA
1 AAATCT AAATCT AAATCT AAATCT AAA
29016 GCAGATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATCT
Found at i:30650 original size:16 final size:16
Alignment explanation
Indices: 30629--30664 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
30619 ATCCAAATAC
30629 AACAACCAATCACCAA
1 AACAACCAATCACCAA
**
30645 AACAACCTGTCACCAA
1 AACAACCAATCACCAA
30661 AACA
1 AACA
30665 CATAGGATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.36, G:0.03, T:0.08
Consensus pattern (16 bp):
AACAACCAATCACCAA
Found at i:33682 original size:32 final size:31
Alignment explanation
Indices: 33646--33751 Score: 140
Period size: 32 Copynumber: 3.3 Consensus size: 31
33636 CCATCTCTAA
*
33646 AAGAAAACGTCCCTATTTAGCGGCGTCTATTG
1 AAGAAAACGCCCCTATTTAG-GGCGTCTATTG
* *
33678 AAGAAAACACCCCTATTGAGGGGCGTCTATTG
1 AAGAAAACGCCCCTATTTA-GGGCGTCTATTG
* *
33710 AAGAAAACGCCCCTATTTAGGAGCATCTATGG
1 AAGAAAACGCCCCTATTTAGG-GCGTCTATTG
33742 AAGAAAACGC
1 AAGAAAACGC
33752 TTTAAAATAG
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
31 2 0.03
32 62 0.95
33 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (31 bp):
AAGAAAACGCCCCTATTTAGGGCGTCTATTG
Found at i:37185 original size:25 final size:25
Alignment explanation
Indices: 37151--37199 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
37141 ATTCCAGAAA
37151 CCAGATTGTCAAAAAAAAAAAGTAC
1 CCAGATTGTCAAAAAAAAAAAGTAC
* *
37176 CCAGATTGTCAAAAGAGAAAAGTA
1 CCAGATTGTCAAAAAAAAAAAGTA
37200 AACCTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.53, C:0.14, G:0.16, T:0.16
Consensus pattern (25 bp):
CCAGATTGTCAAAAAAAAAAAGTAC
Found at i:38792 original size:26 final size:25
Alignment explanation
Indices: 38758--38822 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 25
38748 TATAACAAAT
38758 TATATAATA-ATTATTATTATATTATA
1 TATATAATATA-TATTATT-TATTATA
*
38784 TATATAATATATATTATTTTTTATA
1 TATATAATATATATTATTTATTATA
*
38809 TA-AAAATATATATT
1 TATATAATATATATT
38823 CGGGTTCTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
24 11 0.31
25 8 0.22
26 16 0.44
27 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TATATAATATATATTATTTATTATA
Found at i:38810 original size:2 final size:2
Alignment explanation
Indices: 38710--38797 Score: 52
Period size: 2 Copynumber: 49.0 Consensus size: 2
38700 CTGATACTTA
* * * *
38710 AT AT AT AT AT AT AT AT AT AT AT AC AC AT A- AT AT AC GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
38751 A- AC AA AT -T AT AT A- AT A- AT -T AT -T AT -T AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38785 AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT
38798 TATTTTTTAT
Statistics
Matches: 68, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
1 10 0.15
2 58 0.85
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (2 bp):
AT
Found at i:43711 original size:13 final size:13
Alignment explanation
Indices: 43693--43722 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
43683 ATTTTGCAAT
43693 TATATATTTGTAC
1 TATATATTTGTAC
43706 TATATATTTGTAC
1 TATATATTTGTAC
43719 -ATAT
1 TATAT
43723 TGCAATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (13 bp):
TATATATTTGTAC
Found at i:46935 original size:2 final size:2
Alignment explanation
Indices: 46928--46952 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
46918 GATATTCCTG
46928 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
46953 AATAATAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:47468 original size:20 final size:21
Alignment explanation
Indices: 47443--47492 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
47433 TTTTATGAAA
47443 TTTGATAA-T-CACTATAAAAT
1 TTTGATAACTCCA-TATAAAAT
47463 TTTGATAACCTCCATATAAAAT
1 TTTGATAA-CTCCATATAAAAT
47485 TTTGATAA
1 TTTGATAA
47493 ATTACACTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.30
22 17 0.63
23 2 0.07
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (21 bp):
TTTGATAACTCCATATAAAAT
Found at i:47615 original size:54 final size:54
Alignment explanation
Indices: 47533--47643 Score: 177
Period size: 54 Copynumber: 2.1 Consensus size: 54
47523 GGTGAGCTTT
* * **
47533 GATCATCTGTGGTTATCTTGGGTGGTAATCTCAGATCACCCTGTTTGATTTGCA
1 GATCATCCGTGGTGATCTTGAATGGTAATCTCAGATCACCCTGTTTGATTTGCA
*
47587 GATCATCCGTGGTGATCTTGAATGGTAATCTCAGATCACCCTGTTTGGTTTGCA
1 GATCATCCGTGGTGATCTTGAATGGTAATCTCAGATCACCCTGTTTGATTTGCA
47641 GAT
1 GAT
47644 GTTGCACCTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (54 bp):
GATCATCCGTGGTGATCTTGAATGGTAATCTCAGATCACCCTGTTTGATTTGCA
Found at i:47820 original size:22 final size:23
Alignment explanation
Indices: 47795--47846 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
47785 ACTCCATATG
47795 AAATTTTGTTA-ACTTCCCTAT-A
1 AAATTTTGTTACAC-TCCCTATAA
47817 AAATTTTGTTACACTCCCTATAA
1 AAATTTTGTTACACTCCCTATAA
47840 AAATTTT
1 AAATTTT
47847 AATAACCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.44
Consensus pattern (23 bp):
AAATTTTGTTACACTCCCTATAA
Found at i:47883 original size:22 final size:22
Alignment explanation
Indices: 47792--47887 Score: 68
Period size: 22 Copynumber: 4.3 Consensus size: 22
47782 GAAACTCCAT
* *
47792 ATGAAATTTTGTTAACTTCCCT
1 ATGAAATTTTGATAACTTCCCA
* * *
47814 ATAAAATTTTGTTACAC-TCCCT
1 ATGAAATTTTGATA-ACTTCCCA
* * ** **
47836 ATAAAAATTTTAATAACCACTTA
1 AT-GAAATTTTGATAACTTCCCA
47859 ATGAAATTTTGATAACTTCCCA
1 ATGAAATTTTGATAACTTCCCA
47881 ATGAAAT
1 ATGAAAT
47888 GTTGGTAAGC
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
22 43 0.74
23 15 0.26
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (22 bp):
ATGAAATTTTGATAACTTCCCA
Found at i:47963 original size:52 final size:52
Alignment explanation
Indices: 47860--47966 Score: 128
Period size: 52 Copynumber: 2.1 Consensus size: 52
47850 AACCACTTAA
* * * *
47860 TGAAATTTTGATAACTTCCCAATGAAATGTTGGTAAGCGCACATTATAATTT
1 TGAAATTTTGATAACTTCCCAATAAAATATTGGTAAGCACACATGATAATTT
* *
47912 TGAAATTTTGATAACCTT-CCGATAAAATATTGGTAATCACATCATGA-AATTT
1 TGAAATTTTGATAA-CTTCCCAATAAAATATTGGTAAGCACA-CATGATAATTT
47964 TGA
1 TGA
47967 TAACCAATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
52 40 0.85
53 7 0.15
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (52 bp):
TGAAATTTTGATAACTTCCCAATAAAATATTGGTAAGCACACATGATAATTT
Found at i:49709 original size:21 final size:21
Alignment explanation
Indices: 49669--49729 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
49659 ATTGATATAG
* *
49669 TAGAAATATAT-AATAAATAA
1 TAGAAATAGATAAATAGATAA
49689 T-GCAAATAGATAAATAGATAA
1 TAG-AAATAGATAAATAGATAA
*
49710 TAGAAATAGAGGAAATAGAT
1 TAGAAATAGA-TAAATAGAT
49730 TAAATAGAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 1 0.03
20 8 0.24
21 16 0.47
22 9 0.26
ACGTcount: A:0.59, C:0.02, G:0.15, T:0.25
Consensus pattern (21 bp):
TAGAAATAGATAAATAGATAA
Found at i:54685 original size:30 final size:30
Alignment explanation
Indices: 54606--54686 Score: 137
Period size: 29 Copynumber: 2.7 Consensus size: 30
54596 GAACATATTG
* *
54606 GTATTTGATTAGCATACTTACATAACTCAA
1 GTATTTGATTAACATACTTATATAACTCAA
54636 GTATTT-ATTAACATACTTATATAACTCAA
1 GTATTTGATTAACATACTTATATAACTCAA
54665 GTATTTGATTAACATACTTATA
1 GTATTTGATTAACATACTTATA
54687 ACTTGTCCTT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 27 0.56
30 21 0.44
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (30 bp):
GTATTTGATTAACATACTTATATAACTCAA
Found at i:59904 original size:33 final size:33
Alignment explanation
Indices: 59861--60025 Score: 258
Period size: 33 Copynumber: 5.0 Consensus size: 33
59851 AAAAATAGTC
* *
59861 GAGCCGCCCTATTGGGGCGGCTCCGCCGTGGCT
1 GAGCCGCCCTAGTGGGGAGGCTCCGCCGTGGCT
* * *
59894 AAGCCGCCCTAGTGGGGAGGCTCTGCCATGGCT
1 GAGCCGCCCTAGTGGGGAGGCTCCGCCGTGGCT
* *
59927 GAGCCGCCCTAGTGGGGAGGCTCTGCCATGGCT
1 GAGCCGCCCTAGTGGGGAGGCTCCGCCGTGGCT
59960 GAGCCGCCCTAGTGGGGAGGCTCCGCCGTGGCT
1 GAGCCGCCCTAGTGGGGAGGCTCCGCCGTGGCT
*
59993 GAGCCGCCCTAGTGGGGAGGCTCCGTCGTGGCT
1 GAGCCGCCCTAGTGGGGAGGCTCCGCCGTGGCT
60026 AAGGGCAAAA
Statistics
Matches: 123, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 123 1.00
ACGTcount: A:0.10, C:0.32, G:0.40, T:0.18
Consensus pattern (33 bp):
GAGCCGCCCTAGTGGGGAGGCTCCGCCGTGGCT
Found at i:60051 original size:17 final size:16
Alignment explanation
Indices: 60026--60074 Score: 57
Period size: 14 Copynumber: 3.1 Consensus size: 16
60016 CGTCGTGGCT
60026 AAGGGCAAAAGTGTAA
1 AAGGGCAAAAGTGTAA
* *
60042 AATTGGCAAAAGTCT--
1 AA-GGGCAAAAGTGTAA
60057 AAGGGCAAAAGTGTAA
1 AAGGGCAAAAGTGTAA
60073 AA
1 AA
60075 AGTGGGGCGG
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
14 10 0.38
15 2 0.08
16 4 0.15
17 10 0.38
ACGTcount: A:0.49, C:0.08, G:0.27, T:0.16
Consensus pattern (16 bp):
AAGGGCAAAAGTGTAA
Found at i:68802 original size:29 final size:29
Alignment explanation
Indices: 68769--68828 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
68759 TATAAATAAT
* * *
68769 ATAATATAATTAAATAATTATTTTTATAC
1 ATAATAAAATTAAATAATTATATGTATAC
*
68798 ATAATAAAATTGAATAATTATATGTATAC
1 ATAATAAAATTAAATAATTATATGTATAC
68827 AT
1 AT
68829 TAATTAGAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.43
Consensus pattern (29 bp):
ATAATAAAATTAAATAATTATATGTATAC
Found at i:68958 original size:22 final size:23
Alignment explanation
Indices: 68925--68967 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
68915 TTAATGTTTA
68925 AATTTTATTTTTA-TTTAAAATT
1 AATTTTATTTTTATTTTAAAATT
68947 AATTATTA-TTTTATTTTAAAA
1 AATT-TTATTTTTATTTTAAAA
68968 AATAAATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
AATTTTATTTTTATTTTAAAATT
Found at i:79916 original size:20 final size:20
Alignment explanation
Indices: 79891--79935 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
79881 GAATGCATAG
79891 GGAGACCAAGATATTTGTCC
1 GGAGACCAAGATATTTGTCC
79911 GGAGACCAAGATATTTGTCC
1 GGAGACCAAGATATTTGTCC
*
79931 AGAGA
1 GGAGA
79936 GGAAGAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (20 bp):
GGAGACCAAGATATTTGTCC
Found at i:82185 original size:25 final size:25
Alignment explanation
Indices: 82151--82207 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
82141 AAATTATTAG
* *
82151 GTGGGACGGACCTATCACGTCATCT
1 GTGGGACGGACCCACCACGTCATCT
*
82176 GTGGGACGGACCCACCACGTTATCT
1 GTGGGACGGACCCACCACGTCATCT
*
82201 ATGGGAC
1 GTGGGAC
82208 CAACCAATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.28, G:0.30, T:0.21
Consensus pattern (25 bp):
GTGGGACGGACCCACCACGTCATCT
Found at i:95785 original size:2 final size:2
Alignment explanation
Indices: 95778--95809 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
95768 AATACATCTA
95778 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95810 CCATCGAGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96224 original size:23 final size:23
Alignment explanation
Indices: 96192--96263 Score: 99
Period size: 25 Copynumber: 3.0 Consensus size: 23
96182 TTGTTAGTTT
* *
96192 ATAGAAACCGAGCGAGAGTACTC
1 ATAGAGACCGAGCGAGAGTGCTC
*
96215 ATAGAGACCGAGCGAGAGTGCTTAA
1 ATAGAGACCGAGCGAGAGTGC-T-C
96240 ATAGAGACCGAGCGAGAGTGCTC
1 ATAGAGACCGAGCGAGAGTGCTC
96263 A
1 A
96264 AGATTGTTTG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 20 0.47
24 2 0.05
25 21 0.49
ACGTcount: A:0.36, C:0.19, G:0.31, T:0.14
Consensus pattern (23 bp):
ATAGAGACCGAGCGAGAGTGCTC
Found at i:97176 original size:23 final size:23
Alignment explanation
Indices: 97142--97215 Score: 94
Period size: 23 Copynumber: 3.1 Consensus size: 23
97132 GATTGTTAGT
* *
97142 TCATAGAAACCGAGCGAGAGTAC
1 TCATAGAGACCGAGCGAGAGTGC
*
97165 TCATAGAGACCGAGCGAGAGTGT
1 TCATAGAGACCGAGCGAGAGTGC
*
97188 TCAAATAGAGACTGAGCGAGAGTGC
1 TC--ATAGAGACCGAGCGAGAGTGC
97213 TCA
1 TCA
97216 AGATTGTTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
23 23 0.52
25 21 0.48
ACGTcount: A:0.35, C:0.19, G:0.30, T:0.16
Consensus pattern (23 bp):
TCATAGAGACCGAGCGAGAGTGC
Found at i:97204 original size:25 final size:25
Alignment explanation
Indices: 97144--97216 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
97134 TTGTTAGTTC
* *
97144 ATAGAAACCGAGCGAGAGTACTC--
1 ATAGAGACCGAGCGAGAGTGCTCAA
*
97167 ATAGAGACCGAGCGAGAGTGTTCAA
1 ATAGAGACCGAGCGAGAGTGCTCAA
*
97192 ATAGAGACTGAGCGAGAGTGCTCAA
1 ATAGAGACCGAGCGAGAGTGCTCAA
97217 GATTGTTTGG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 20 0.47
25 23 0.53
ACGTcount: A:0.37, C:0.18, G:0.30, T:0.15
Consensus pattern (25 bp):
ATAGAGACCGAGCGAGAGTGCTCAA
Found at i:101024 original size:23 final size:22
Alignment explanation
Indices: 100976--101025 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
100966 AAGGAGTAGG
* *
100976 TTTTACTTTTCTACCAAAAATG
1 TTTTACTTTCCTACCAAAAATA
**
100998 TTTTACTATTCCTACCAGGAATA
1 TTTTACT-TTCCTACCAAAAATA
101021 TTTTA
1 TTTTA
101026 GATCAAGTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.30, C:0.18, G:0.06, T:0.46
Consensus pattern (22 bp):
TTTTACTTTCCTACCAAAAATA
Found at i:102252 original size:48 final size:49
Alignment explanation
Indices: 102182--102680 Score: 405
Period size: 48 Copynumber: 10.4 Consensus size: 49
102172 TTACTTGCTT
* * **
102182 TTCCCAAAATGTCCTTTTCGGTCGGAAGGTGCTATTTTTATT-ATCTTA
1 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATTTTTATTCATCTTA
* *
102230 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGTTATTTTCATTCA-CTTA
1 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATTTTTATTCATCTTA
* * * *
102278 TTCTC-AAAATGCCCTTCCCAGTCGGAAGATGATATTTTTTTTTCAT-TTA
1 TTC-CAAAAATGCCCTTCCCGGTCGGAAGGTGCTA-TTTTTATTCATCTTA
* * * *
102327 TTTCAAAAATGTCTTTCCCGGTCGGAAGGTGCTATTTTCATTCA-CTTA
1 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATTTTTATTCATCTTA
* * * *
102375 CTCC-AAAATGCCCTTCCCAGTCGGAAGGTGCTATTTTTATT-GTCTCA
1 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATTTTTATTCATCTTA
** * * * *
102422 TTCCAAAAATGCCCTTCTTGGTCGGAAGGAGCAAGTTTTCTTCA-CTTA
1 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATTTTTATTCATCTTA
* * * * * ** * *
102470 TTCCCAAATTGCCCTTCACAGTCGGAAGGTGCAAGGTTTCTTC-GCTTA
1 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATTTTTATTCATCTTA
* * * * *
102518 TTCCCAAAATGCTCTTCCCGGTTGGAAGGCGCATATTTTTATTCGT-TTA
1 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGC-TATTTTTATTCATCTTA
* * * * * *
102567 TCCCAAAAATACCCTTCCCGGTCGGAAGGCGCAAGTTTTCTTCAT-TTA
1 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATTTTTATTCATCTTA
* * * * * *
102615 TTCCAAGAATGCCCTTCCCGGCCGAAAGGTGCAAGTTTTCTTC-T-TT-
1 TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATTTTTATTCATCTTA
* *
102661 TTCCCAAAGTGCCCTTCCCG
1 TTCCAAAAATGCCCTTCCCG
102681 ATCAAAAGGT
Statistics
Matches: 366, Mismatches: 73, Indels: 26
0.79 0.16 0.06
Matches are distributed among these distances:
46 17 0.05
47 42 0.11
48 231 0.63
49 76 0.21
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (49 bp):
TTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATTTTTATTCATCTTA
Found at i:102399 original size:96 final size:96
Alignment explanation
Indices: 102202--102679 Score: 427
Period size: 97 Copynumber: 5.0 Consensus size: 96
102192 GTCCTTTTCG
* *
102202 GTCGGAAGGTGCTA-TTTTTATT-ATCTTATTCCAAAAATGCCCTTCCCGGTCGGAAGGTGTTAT
1 GTCGGAAGGTGCTATTTTTTTTTCAT-TTATTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTAT
102265 TTTCATTCACTTATTCTCAAAATGCCCTTCCCA
65 TTTCATTCACTTATTC-CAAAATGCCCTTCCCA
* * * * *
102298 GTCGGAAGATGATATTTTTTTTTCATTTATTTCAAAAATGTCTTTCCCGGTCGGAAGGTGCTATT
1 GTCGGAAGGTGCTATTTTTTTTTCATTTATTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATT
*
102363 TTCATTCACTTACTCCAAAATGCCCTTCCCA
66 TTCATTCACTTATTCCAAAATGCCCTTCCCA
* * ** * *
102394 GTCGGAAGGTGCTATTTTTATTGTC--TCATTCCAAAAATGCCCTTCTTGGTCGGAAGGAGCAAG
1 GTCGGAAGGTGCTATTTTT-TTTTCATTTATTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTA-
* *
102457 TTTTC-TTCACTTATTCCCAAATTGCCCTTCACA
64 TTTTCATTCACTTATT-CCAAAATGCCCTTCCCA
*** * ** * * * *
102490 GTCGGAAGGTGC-AAGGTTTCTTCGCTTATTCCCAAAATGCTCTTCCCGGTTGGAAGGCGCATAT
1 GTCGGAAGGTGCTATTTTTTTTTCATTTATTCCAAAAATGCCCTTCCCGGTCGGAAGGTGC-TAT
* ** * * *
102554 TTTTATTCGTTTATCCCAAAAATACCCTTCCCG
65 TTTCATTCACTTATTCC-AAAATGCCCTTCCCA
* ** * * * * *
102587 GTCGGAAGGCGC-AAGTTTTCTTCATTTATTCCAAGAATGCCCTTCCCGGCCGAAAGGTGCAAGT
1 GTCGGAAGGTGCTATTTTTTTTTCATTTATTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTA-T
* *
102651 TTTC-TT--CTTTTTCCCAAAGTGCCCTTCCC
65 TTTCATTCACTTATT-CCAAAATGCCCTTCCC
102680 GATCAAAAGG
Statistics
Matches: 309, Mismatches: 61, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
94 18 0.06
95 43 0.14
96 114 0.37
97 132 0.43
98 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (96 bp):
GTCGGAAGGTGCTATTTTTTTTTCATTTATTCCAAAAATGCCCTTCCCGGTCGGAAGGTGCTATT
TTCATTCACTTATTCCAAAATGCCCTTCCCA
Found at i:102590 original size:145 final size:143
Alignment explanation
Indices: 102202--102680 Score: 407
Period size: 145 Copynumber: 3.3 Consensus size: 143
102192 GTCCTTTTCG
* * * * * * *
102202 GTCGGAAGGTGCTATTTTTATTATCTTATTCCAAAAATGCCCTTCCCGGTCGGAAGGTGTTATTT
1 GTCGGAAGGTGCAAGTTTTCTT-CCTTATTCCCAAAATGCCCTTCCCGGTCGGAAGGCGCTATTT
* ** * * * * * * *
102267 TCATTCACTTATTCTC-AAAATGCCCTTCCCAGTCGGAA-GATG-ATATTTTTTTTTCATTTATT
65 TTATTGTCTCA-TCCCAAAAATACCCTTCCCGGTCGGAAGGA-GCA-A-GTTTTCTTCACTTATT
* * * * * *
102329 TCAAAAATGTCTTTCCCG
126 CCAAGAATGCCCTTCACA
* * * *
102347 GTCGGAAGGTGCTA-TTTTCATTCACTTACT-CCAAAATGCCCTTCCCAGTCGGAAGGTGCTATT
1 GTCGGAAGGTGCAAGTTTTC-TTC-CTTATTCCCAAAATGCCCTTCCCGGTCGGAAGGCGCTATT
* * **
102410 TTTATTGTCTCATTCCAAAAATGCCCTTCTTGGTCGGAAGGAGCAAGTTTTCTTCACTTATTCCC
64 TTTATTGTCTCATCCCAAAAATACCCTTCCCGGTCGGAAGGAGCAAGTTTTCTTCACTTATT-CC
*
102475 AA-ATTGCCCTTCACA
128 AAGAATGCCCTTCACA
* * *
102490 GTCGGAAGGTGCAAGGTTTCTTCGCTTATTCCCAAAATGCTCTTCCCGGTTGGAAGGCGCATATT
1 GTCGGAAGGTGCAAGTTTTCTTC-CTTATTCCCAAAATGCCCTTCCCGGTCGGAAGGCGC-TATT
* * *
102555 TTTATTCGT-TTATCCCAAAAATACCCTTCCCGGTCGGAAGGCGCAAGTTTTCTTCATTTATTCC
64 TTTATT-GTCTCATCCCAAAAATACCCTTCCCGGTCGGAAGGAGCAAGTTTTCTTCACTTATTCC
* *
102619 AAGAATGCCCTTCCCG
128 AAGAATGCCCTTCACA
* * * *
102635 GCCGAAAGGTGCAAGTTTTCTT-CTTTTTCCCAAAGTGCCCTTCCCG
1 GTCGGAAGGTGCAAGTTTTCTTCCTTATTCCCAAAATGCCCTTCCCG
102681 ATCAAAAGGT
Statistics
Matches: 275, Mismatches: 48, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
143 65 0.24
144 99 0.36
145 109 0.40
146 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (143 bp):
GTCGGAAGGTGCAAGTTTTCTTCCTTATTCCCAAAATGCCCTTCCCGGTCGGAAGGCGCTATTTT
TATTGTCTCATCCCAAAAATACCCTTCCCGGTCGGAAGGAGCAAGTTTTCTTCACTTATTCCAAG
AATGCCCTTCACA
Done.