Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015367.1 Corchorus capsularis cultivar CVL-1 contig15388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164631

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--29
2
14.5
2
100
0
58
51
0
0
48
1.00
3375--3443
30
2.3
30
97
0
129
17
27
28
26
1.97
4523--4562
20
2.0
20
85
0
53
15
7
20
57
1.61
7378--7462
23
3.8
22
79
14
77
21
16
5
56
1.61
7372--7739
43
8.4
42
72
14
178
19
20
5
54
1.64
7471--7739
22
12.6
21
76
11
235
19
20
5
53
1.65
11522--11547
10
2.6
10
100
0
52
23
7
19
50
1.73
17544--17576
13
2.6
13
95
4
59
69
6
0
24
1.10
18476--18501
10
2.6
10
100
0
52
23
7
19
50
1.73
19238--19307
28
2.5
28
81
2
79
45
18
14
21
1.84
19238--19316
27
2.9
28
80
1
88
41
20
16
21
1.90
24654--24726
29
2.5
29
84
13
96
20
15
28
35
1.93
25828--25854
3
9.0
3
100
0
54
66
0
0
33
0.92
27440--28153
101
7.2
101
87
3
1013
28
20
23
27
1.99
27425--28153
200
3.7
202
89
2
1016
28
20
23
27
1.99
27440--28153
301
2.4
300
88
3
1050
28
20
23
27
1.99
29801--29849
18
2.7
18
80
0
62
48
0
0
51
1.00
29814--29950
62
2.2
62
93
3
231
49
0
1
48
1.10
31598--31675
22
3.3
22
69
22
68
26
24
15
33
1.95
31587--31682
49
2.0
49
95
0
174
27
22
17
32
1.97
34712--34763
27
1.9
27
84
0
68
19
15
9
55
1.67
34792--34841
21
2.4
21
74
9
57
34
6
10
50
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34883--34966
23
4.2
19
73
20
73
35
7
5
51
1.54
35845--35887
21
2.1
20
86
4
59
37
2
11
48
1.52
36393--36455
26
2.4
26
89
0
90
30
19
7
42
1.79
37397--37454
26
2.2
26
87
0
80
29
17
6
46
1.74
37410--37464
26
2.1
26
86
0
74
29
18
5
47
1.71
37832--37961
64
2.0
64
93
0
224
30
11
10
46
1.74
38696--38726
15
2.1
14
94
5
53
54
6
0
38
1.26
39180--39341
79
2.0
79
83
10
204
35
10
20
33
1.87
52788--52825
20
2.0
20
89
5
60
44
13
15
26
1.83
55279--55326
18
2.7
17
87
6
60
54
2
2
41
1.24
58082--58110
3
9.7
3
100
0
58
34
0
0
65
0.93
61555--61580
12
2.2
12
100
0
52
50
0
0
50
1.00
71279--71307
5
5.8
5
100
0
58
0
20
0
79
0.74
75449--75521
28
2.6
28
86
4
94
16
9
26
47
1.77
78622--78661
8
4.6
8
82
17
53
47
0
25
27
1.52
78402--78896
255
1.9
255
97
0
945
24
12
26
36
1.91
80543--80602
31
2.0
31
93
3
104
45
28
3
23
1.69
82021--82267
31
8.3
31
85
8
235
17
21
26
34
1.95
82071--82235
84
2.0
84
86
0
231
16
18
26
37
1.93
82050--82266
115
1.9
115
86
0
308
17
20
26
35
1.95
86770--86801
15
2.1
15
94
0
55
15
0
37
46
1.46
92639--92747
32
3.4
32
83
3
121
17
11
33
36
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92624--92744
16
7.7
16
67
13
72
15
12
35
36
1.85
92886--92924
20
2.0
20
89
0
60
38
5
2
53
1.37
92951--93043
16
5.8
16
71
8
64
6
11
31
50
1.64
92980--93032
16
3.2
17
84
7
65
7
9
26
56
1.57
92951--93024
32
2.3
32
80
0
85
8
13
29
48
1.71
103134--103305
86
2.0
86
100
0
344
29
20
11
38
1.88
106614--106898
148
1.9
149
94
2
500
41
13
13
31
1.83
124284--124426
61
2.4
59
87
5
207
46
9
11
31
1.73
129321--129369
22
2.2
22
85
10
64
36
8
8
46
1.63
139050--139212
80
2.0
80
96
0
299
26
15
20
36
1.93
143019--143120
53
1.9
53
100
0
204
39
10
15
34
1.82
156117--156149
13
2.5
13
100
0
66
60
9
12
18
1.57
156075--156190
54
2.1
55
93
1
198
54
5
11
29
1.57
156996--157042
3
15.7
3
100
0
94
34
0
0
65
0.93
157679--157714
2
19.0
2
88
11
58
50
0
0
50
1.00

Tables:   1

The End!