Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015370.1 Corchorus capsularis cultivar CVL-1 contig15391, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 785

Length: 1309
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34


Found at i:774 original size:20 final size:20

Alignment explanation


    Indices: 723--781  Score: 68
    Period size: 20  Copynumber: 3.0  Consensus size: 20

        713 AATATATATT

                        **       
        723 TATATTATTAGTAAATTAGTA
          1 TATATTATTA-TTTATTAGTA

            *                   
        744 AATA-T-TTATTTATTAGTA
          1 TATATTATTATTTATTAGTA

                                
        762 TATATTATTATTTATTAGTA
          1 TATATTATTATTTATTAGTA

        782 AAACATATCT


Statistics
Matches: 32,  Mismatches: 4, Indels: 5
        0.78            0.10        0.12

Matches are distributed among these distances:
  18   11  0.34
  19    4  0.12
  20   14  0.44
  21    3  0.09

ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54


Consensus pattern (20 bp):   
TATATTATTATTTATTAGTA

Found at i:867 original size:2 final size:2

Alignment explanation


    Indices: 862--909  Score: 57
    Period size: 2  Copynumber: 25.5  Consensus size: 2

        852 TTTAAAAACT

                                                *  *                      
        862 TA TA TA T- TA -A TA TA TA TA TA TA CA CA T- TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                         
        901 TA TA TA TA T
          1 TA TA TA TA T

        910 TTCGGGGCCG


Statistics
Matches: 41,  Mismatches: 2, Indels: 6
        0.84            0.04        0.12

Matches are distributed among these distances:
   1    3  0.07
   2   38  0.93

ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48


Consensus pattern (2 bp):   
TA

Done.