Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015371.1 Corchorus capsularis cultivar CVL-1 contig15392, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15034

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
508--658
36
4.2
36
91
2
223
29
22
9
38
1.86
651--930
37
7.8
37
89
6
343
22
29
8
39
1.84
778--873
19
5.2
19
63
14
65
20
32
9
37
1.85
797--857
18
3.3
18
65
13
52
19
32
4
42
1.73
971--1260
76
3.7
78
87
7
328
24
21
11
43
1.85
971--1260
41
7.5
40
79
10
286
24
21
11
43
1.85
1128--1254
35
3.5
35
76
12
137
25
21
11
42
1.85
988--1218
117
2.0
116
86
8
326
24
22
10
42
1.85
1350--1580
37
6.3
37
83
5
231
25
17
9
46
1.79
1350--1580
73
3.2
71
84
8
270
25
17
9
46
1.79
1348--1580
110
2.1
110
82
8
289
26
17
9
46
1.79
1389--1603
110
2.0
110
80
9
251
27
18
9
44
1.81
1560--1722
41
4.1
39
84
6
127
28
22
10
38
1.87
1575--1715
41
3.5
40
90
0
183
28
22
11
37
1.89
4807--4841
13
2.7
13
95
0
61
62
20
2
14
1.43
5450--5491
12
3.6
12
80
3
50
2
30
0
66
1.04
6608--6641
15
2.3
15
94
0
59
47
23
23
5
1.73
8391--8432
20
2.0
21
86
4
59
26
2
14
57
1.50
8271--8705
85
5.1
85
93
1
710
33
4
15
46
1.67
8696--8751
12
4.6
12
80
10
60
48
10
1
39
1.49
9203--9377
85
2.1
85
90
2
271
36
6
13
44
1.69
9366--9501
2
69.0
2
73
5
98
43
6
4
45
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9323--9501
12
14.2
12
70
13
83
41
5
6
46
1.53
9679--9722
21
2.1
21
86
0
61
20
36
6
36
1.79
10059--10123
33
2.0
33
87
6
96
12
32
41
13
1.82

Tables:   1

The End!