Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015372.1 Corchorus capsularis cultivar CVL-1 contig15393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2490
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:1440 original size:15 final size:16

Alignment explanation


    Indices: 1422--1453  Score: 57
    Period size: 15  Copynumber: 2.1  Consensus size: 16

       1412 GATATTGATT

                            
       1422 CTTCAGAG-TTTTCTG
          1 CTTCAGAGCTTTTCTG

                            
       1437 CTTCAGAGCTTTTCTG
          1 CTTCAGAGCTTTTCTG

             
       1453 C
          1 C

       1454 CTTCTGCATT


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    8  0.50
  16    8  0.50

ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44


Consensus pattern (16 bp):   
CTTCAGAGCTTTTCTG

Done.