Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015373.1 Corchorus capsularis cultivar CVL-1 contig15394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37208

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
548--581
16
2.2
16
94
5
61
47
17
23
11
1.81
575--611
15
2.5
15
95
0
65
43
13
18
24
1.86
1703--1756
27
2.0
27
100
0
108
18
14
14
51
1.76
1709--1769
27
2.3
27
88
0
86
26
11
13
49
1.75
2556--2603
21
2.4
19
79
6
51
64
4
4
27
1.30
8679--8815
72
1.9
72
92
0
229
41
10
8
38
1.71
15212--15264
27
2.0
27
100
0
106
18
15
15
50
1.77
15217--15277
27
2.3
27
88
0
86
26
11
13
49
1.75
21254--21293
20
2.0
20
90
0
62
30
0
5
65
1.14
25066--25122
29
2.0
29
83
13
73
43
14
8
33
1.76
25307--25378
30
2.4
29
86
6
99
33
11
11
44
1.75
26959--27037
29
2.7
29
88
0
113
30
21
16
31
1.95
29649--29710
30
2.1
30
87
6
90
35
20
9
33
1.86
30935--31082
74
2.0
74
98
0
287
42
24
4
28
1.74
31244--31284
18
2.4
18
84
11
52
17
17
0
65
1.27
33455--33492
11
3.5
11
92
7
69
28
0
0
71
0.87
33513--33544
16
2.0
16
100
0
64
31
12
25
31
1.92
35868--36078
104
2.0
104
100
0
422
35
21
3
39
1.71

Tables:   1

The End!